GTEx MCP Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Instructions
Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.
This server publishes no instructions, or was last inspected before Glama recorded them.
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_gene_expressionC | Get gene expression data across tissues for a specific gene |
| get_median_gene_expressionC | Get median gene expression levels across tissues |
| get_top_expressed_genesC | Get top expressed genes in a specific tissue |
| get_tissue_specific_genesC | Get genes with tissue-specific expression patterns |
| get_clustered_expressionC | Get clustered gene expression data for visualization |
| calculate_expression_correlationC | Calculate expression correlation between genes across tissues |
| get_differential_expressionC | Get differential gene expression between tissue groups |
| get_eqtl_genesC | Get genes with eQTL associations for a genomic region |
| get_single_tissue_eqtlsB | Get single-tissue eQTL results for a gene |
| calculate_dynamic_eqtlC | Calculate dynamic eQTL effects across tissues |
| get_multi_tissue_eqtlsC | Get multi-tissue eQTL meta-analysis results |
| get_sqtl_resultsC | Get splicing QTL (sQTL) results for a gene |
| analyze_ld_structureB | Analyze linkage disequilibrium structure around eQTL variants |
| search_genesC | Search for genes by symbol, name, or description |
| get_gene_infoC | Get detailed information about a specific gene |
| get_variantsC | Get genetic variants in a genomic region |
| get_tissue_infoC | Get information about GTEx tissues and sample counts |
| get_sample_infoB | Get GTEx sample metadata and demographics |
| get_subject_phenotypesC | Get subject phenotype data and demographics |
| validate_gene_idC | Validate and normalize gene identifiers |
| validate_variant_idC | Validate variant identifiers and genomic coordinates |
| get_dataset_infoC | Get information about available GTEx datasets |
| search_transcriptsC | Search for gene transcripts and isoforms |
| get_gene_ontologyC | Get Gene Ontology annotations for a gene |
| convert_coordinatesC | Convert between different genomic coordinate systems |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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