GTEx MCP Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_gene_expressionC | Get gene expression data across tissues for a specific gene |
| get_median_gene_expressionC | Get median gene expression levels across tissues |
| get_top_expressed_genesC | Get top expressed genes in a specific tissue |
| get_tissue_specific_genesC | Get genes with tissue-specific expression patterns |
| get_clustered_expressionC | Get clustered gene expression data for visualization |
| calculate_expression_correlationC | Calculate expression correlation between genes across tissues |
| get_differential_expressionC | Get differential gene expression between tissue groups |
| get_eqtl_genesC | Get genes with eQTL associations for a genomic region |
| get_single_tissue_eqtlsB | Get single-tissue eQTL results for a gene |
| calculate_dynamic_eqtlC | Calculate dynamic eQTL effects across tissues |
| get_multi_tissue_eqtlsC | Get multi-tissue eQTL meta-analysis results |
| get_sqtl_resultsC | Get splicing QTL (sQTL) results for a gene |
| analyze_ld_structureB | Analyze linkage disequilibrium structure around eQTL variants |
| search_genesC | Search for genes by symbol, name, or description |
| get_gene_infoC | Get detailed information about a specific gene |
| get_variantsC | Get genetic variants in a genomic region |
| get_tissue_infoC | Get information about GTEx tissues and sample counts |
| get_sample_infoB | Get GTEx sample metadata and demographics |
| get_subject_phenotypesC | Get subject phenotype data and demographics |
| validate_gene_idC | Validate and normalize gene identifiers |
| validate_variant_idC | Validate variant identifiers and genomic coordinates |
| get_dataset_infoC | Get information about available GTEx datasets |
| search_transcriptsC | Search for gene transcripts and isoforms |
| get_gene_ontologyC | Get Gene Ontology annotations for a gene |
| convert_coordinatesC | Convert between different genomic coordinate systems |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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