BioOntology MCP Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| search_termsC | Search across ontology terms with advanced filtering options |
| search_propertiesC | Search ontology properties by their labels and IDs |
| search_ontologiesC | Search for ontologies by name, description, or domain |
| get_ontology_infoB | Get detailed information about a specific ontology |
| annotate_textC | Analyze text and identify relevant ontology terms with configurable parameters |
| recommend_ontologiesC | Get ontology recommendations for text or keywords with customizable weights |
| batch_annotateC | Process multiple texts for annotation efficiently |
| get_class_infoB | Get detailed information about a specific ontology class |
| get_ontology_metricsC | Get usage statistics and quality metrics for an ontology |
| get_analytics_dataC | Get visitor statistics and popularity trends with optional date filtering |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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