InterProScan MCP Service
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| INTERPROSCAN_BACKEND | No | Backend policy: auto, local, or api | |
| INTERPROSCAN_DATA_DIR | No | Path to prepared data directory | |
| INTERPROSCAN_MCP_HOST | No | HTTP host | |
| INTERPROSCAN_MCP_PATH | No | HTTP path | |
| INTERPROSCAN_MCP_PORT | No | HTTP port | |
| INTERPROSCAN_RUN_ROOT | No | Writable root for job artifacts | |
| INTERPROSCAN_API_EMAIL | No | Email for API requests | |
| INTERPROSCAN_DATA_ROOT | No | Prepared data directory (for Docker) | |
| INTERPROSCAN_EXECUTABLE | No | Path to interproscan.sh | |
| INTERPROSCAN_API_ENDPOINT | No | EMBL-EBI InterProScan REST endpoint | |
| INTERPROSCAN_INSTALL_ROOT | No | Directory containing interproscan.sh (for Docker) | |
| INTERPROSCAN_MCP_TRANSPORT | No | Transport protocol: stdio or http | |
| INTERPROSCAN_DEFAULT_THREADS | No | Default number of threads | |
| INTERPROSCAN_DEFAULT_TIMEOUT | No | Default timeout in seconds | |
| INTERPROSCAN_ALLOWED_INPUT_ROOTS | No | Comma-separated allowed input directories |
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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