Enables protein sequence analysis and structure prediction by extracting ESM-2 embeddings and batch processing FASTA files via Docker. It provides tools for large-scale embedding extraction, job monitoring, and model management within an MCP-compatible environment.
Enables AI assistants to perform NCBI BLAST sequence similarity searches through natural language, supporting nucleotide and protein searches, custom database creation, and multiple output formats.
A production-ready Model Context Protocol (MCP) server that provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.
Enables protein structure and sequence searches using FoldSeek, with support for multiple databases, automatic model downloads, and structured job management.
A mock MCP server that exposes protein structure prediction tools (submit, status, results) for integration with Gemini Enterprise, demonstrating the bring-your-own-MCP capability.
