RepoImmune MCP Server
Analyzes GitHub repositories and pull-request diffs to mine historical bug fixes, build regression checks, retrieve linked issues/PRs/commits/tests, and provide evidence for coding agents. Includes a read-only GitHub Action for PR analysis with SARIF and Markdown output.
Click on "Deploy Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@RepoImmune MCP ServerCheck this patch against past regressions in the repo"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
RepoImmune turns a repository's resolved bugs into code-native, evidence-backed checks that can be queried by humans and coding agents.
Input | Processing | Output |
A GitHub repository or PR diff | Retrieve historical issue → fix → test → AST evidence | Exact regression location, source links, protected tests, and the historical fix |

60-second quick start
git clone https://github.com/Alex0AI/RepoImmune.git
cd RepoImmune
python -m venv .venv
# Windows: .venv\Scripts\activate
# macOS/Linux: source .venv/bin/activate
python -m pip install -e .
repoimmune init .
repoimmune check --diff examples/reintroduce-astropy-12907.diff --memory examples/memory
repoimmune replay astropy-12907 --memory examples/memory
repoimmune report --format htmlThe demo is offline, keyless, and dependency-free at runtime. The check intentionally exits 2 because it finds a real historical regression from Astropy PR #12907.
Related MCP server: mcp-software-engineering-challenge
What is executable memory?
A Behavior Card is not a chat summary. It binds an invariant to before/after code, AST form, exact symbols, regression tests, commits, source URLs, license, evidence class, and an optional replay capsule. RepoImmune refuses to promote a mined candidate when the evidence chain is incomplete.
flowchart LR
I[Issue / report] --> B[Buggy commit]
B --> F[Failing behavior]
F --> P[Fix PR / commit]
P --> T[Regression test]
T --> S[AST + symbol change]
S --> V[Repository invariant]
V --> C[Patch immunity check]The included vertical slice detects this exact reversion:
- cright[-right.shape[0]:, -right.shape[1]:] = right
+ cright[-right.shape[0]:, -right.shape[1]:] = 1It reports the precise line, explains why the all-ones block was historically wrong, links the issue/PR/merge commit, and names the pytest cases added with the fix.
CLI
repoimmune init .
repoimmune mine --repo owner/project
repoimmune check --diff HEAD~1
repoimmune recall "pagination returns duplicate rows"
repoimmune explain <behavior-card-id>
repoimmune replay <capsule-id>
repoimmune report --format html
repoimmune validate <card.json>check emits Markdown, JSON, or SARIF. mine saves conservative candidates only; it never calls an LLM and does not claim a Behavior Card from a title alone.
Agent and CI integrations
The composite GitHub Action analyzes pull-request diffs read-only and uploads SARIF/Markdown evidence.
The stdio MCP server exposes six structured, read-only tools:
search_past_failures,explain_code_history,check_patch_against_memory,list_invariants_for_file,get_regression_test, andreplay_behavior_case.The open Agent Skill asks an agent to recall history before risky edits and again before claiming completion. It grants no commit, push, merge, or test-bypass authority.
The static demo works without login or an API key.
Evidence classes
Every result is explicitly one of:
verified: directly replayed or mechanically corroborated with primary code/test evidence.externally_reported: trusted upstream or benchmark execution record, not reproduced here.heuristic: useful candidate or similarity signal, not proof.inconclusive: conflicting or incomplete evidence.
A similarity score is never presented as proof. Findings always show the matched code and source evidence.
Why this is different
Agent/chat memory: remembers conversations or repository facts; RepoImmune mines code history and creates mechanical checks that outlive any agent session.
SWE-bench: evaluates whether an agent can repair an issue; RepoImmune converts resolved issues into durable prevention assets.
Static analysis: starts from general rules; RepoImmune learns repository-specific invariants from that repository's real failures.
Test generation: may create tests; RepoImmune preserves the causal chain among report, buggy/fixed code, test, and invariant.
git blame: tells who and when; RepoImmune explains why behavior must survive and can check it.
See research-landscape.md for the evidence-backed comparison.
Security model
Issue text, PR comments, code, patches, and repository metadata are untrusted data. RepoImmune never evaluates them as instructions. Mining uses bounded HTTPS responses; refs and repository names are validated; capsule runs use fixed argv without a shell, reject absolute paths and symlinks, and time out. Unknown repositories' install scripts or tests are never run by default. See SECURITY.md and docs/threat-model.md.
Current scope and honest limits
The alpha deeply supports Python AST and pytest evidence. TypeScript/TSX has an optional pinned tree-sitter adapter for normalized structure and call extraction; JavaScript uses deterministic token structure, and Jest/Vitest can be recorded as test evidence. Whole-program interprocedural reachability, automatic upstream environment reconstruction, and broad language support are roadmap items. Dataset-scale cards are externally_reported until replayed; the bundled Astropy vertical slice is the only locally verified behavioral capsule in v0.1.0.
Reproducibility
python scripts/build_research_snapshot.py --limit 500 --cards 120
python scripts/run_experiments.py
pytest
coverage run -m pytest && coverage report
ruff check . && mypy src/repoimmuneAll published counts are regenerated into research/results.json; classifications and limitations are preserved, including unsuccessful or inconclusive cases. Data provenance lives in DATA_SOURCES.md, THIRD_PARTY.md, and research/data-card.md.
The committed v0.1 snapshot contains 500 candidates, 120 Behavior Cards, 12 repositories, and 30 lightweight structural capsules. On deterministic mutations it detected 120/120 exact historical reversions and 120/120 protected assertion deletions; same-symbol fixed-form refactors produced 9/120 false positives (7.5%). Title-derived retrieval reached Recall@5/MRR 1.0/1.0, but this is explicitly a same-source plumbing test. Independent mining precision and controlled Agent A/B remain inconclusive.
Contributing
Read CONTRIBUTING.md, the roadmap, and the Behavior Card schema before proposing a new miner or evidence source. Apache-2.0 licensed.
中文说明:README.zh-CN.md
Available Tools
6 toolscheck_patch_against_memoryC
check patch against memory
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
With no annotations provided, the description carries the full burden of disclosing behavioral traits. It only restates the tool name and gives no indication of side effects, return behavior, input expectations, or what 'memory' refers to.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is minimal but not meaningfully concise; it is under-specified. It provides no front-loaded useful content and reads as a placeholder rather than a structured tool definition.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Despite having no parameters and no output schema, the tool still needs context such as what 'patch' and 'memory' refer to and what the result indicates. The description is completely inadequate for an agent to select and invoke this tool correctly.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The tool has zero parameters, so the baseline is 4. There is no parameter information missing or requiring compensation from the description.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description 'check patch against memory' is a verbatim restatement of the tool name, providing no additional information about what the tool actually does. It is a tautology that fails to distinguish itself from the sibling tools such as search_past_failures or explain_code_history.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
There is no guidance whatsoever about when to use this tool versus alternatives. The description offers no context, prerequisites, or exclusions, leaving an agent to guess when this tool is appropriate.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
explain_code_historyD
explain code history
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, and the description adds zero behavioral information. It does not disclose whether this is a read-only operation, how it retrieves history, what output format to expect, or any side effects. The description carries the full burden for behavioral disclosure and fails entirely.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is brief, but brevity here is under-specification rather than efficient conciseness. A single phrase that repeats the tool name without elaboration does not earn credit for structure; it fails to convey any substantive information while appearing to be a complete definition.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
The tool has no output schema, no annotations, and a descriptor that is a tautology. Given its sibling tools perform distinct historical/diagnostic functions, an agent cannot determine what inputs are needed, what results to expect, or how this differs from related operations. The definition is completely inadequate.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The tool accepts 0 parameters, so there is nothing for the description to clarify about argument meanings. Per the baseline for 0-parameter tools, this dimension is not penalized for missing parameter documentation. The description's lack of context does not affect this score.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description 'explain code history' is essentially a restatement of the tool name with a verb and resource, but it provides no actual explanation of what 'explain' means in this context or what 'code history' refers to. It is a tautology, not a clear statement of function.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
There is no guidance on when to use this tool versus its siblings like search_past_failures or replay_behavior_case. No context, prerequisites, or situational cues are provided. The agent is left to guess which scenario would call for explaining code history.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_regression_testD
get regression test
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description must carry the full burden, but it reveals nothing about behavior, side effects, return values, or error cases. It is purely a label, not a behavioral disclosure.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The text is extremely short, but this is under-specification rather than useful conciseness. It says nothing beyond the tool name and provides no structured or front-loaded information.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
For a tool with no annotations and no output schema, the description is entirely inadequate. It does not explain what a regression test is, what the tool returns, or how it relates to the listed sibling tools.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The tool declares zero parameters, so the baseline is 4; the description adds no parameter meaning, but there are no parameters for it to explain. The permissive additionalProperties: true schema is not clarified, but that is a minor gap with no required inputs.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description 'get regression test' merely restates the tool name and adds no verb-resource detail beyond it. It does not distinguish this tool from siblings like search_past_failures or replay_behavior_case.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
There is no guidance about when to use this tool or when to prefer a sibling. No context, conditions, or alternatives are mentioned.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
list_invariants_for_fileC
list invariants for file
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
With no annotations, the description carries the full burden of behavioral disclosure, but it only repeats the action 'list' and the resource 'file'. It does not mention side effects (likely read-only), error conditions, ordering, filtering, or what data is actually returned.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
One short sentence is concise, but this is under-specification rather than efficient brevity. The description omits essential details that an agent needs, so it does not earn credit for structure.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
The tool has no output schema and no annotations, so the description must provide nearly all context. It fails to state how the file is selected, what invariants look like, or what a successful call returns, leaving the agent with only the tool name as guidance.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
There are zero declared parameters, so the description cannot add parameter-level detail beyond the schema. The 100% schema coverage and empty parameter list make the missing specification less harmful, though the description does not explain how 'file' is supplied.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description 'list invariants for file' is a near-verbatim restatement of the tool name. It identifies the action and resource but does not clarify what 'invariants' means in this context or how it differs from the sibling tools, making it tautological rather than informative.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description gives no guidance about when to use this tool instead of alternatives such as search_past_failures or check_patch_against_memory. There is no context, prerequisite, or exclusion information, leaving the agent to guess.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
replay_behavior_caseD
replay behavior case
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description carries the full burden of behavioral disclosure. It fails to state side effects, permissions, return values, or any observable behavior beyond the vague verb 'replay'. There is nothing here to inform an agent about what will happen when the tool is invoked.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Three words is technically concise, but this is under-specification rather than effective structure. The description has no front-loaded action statement, no scoping, and no differentiation—it reads as a placeholder, not a deliberate, minimal definition.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
With no annotations, no output schema, no parameter details, and only sibling tool names for context, the description is the sole source of guidance and it provides none. An agent cannot understand what a 'behavior case' is, what replaying entails, or what result to expect.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
There are zero parameters, so the description has no parameter details to explain, and the baseline is 4. However, the schema allows additionalProperties: true, meaning arbitrary input could be passed, and the description offers no hint about what properties might be relevant. This is a minor gap given no defined parameters exist.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description is literally the tool name: 'replay behavior case'. It restates the name without defining the action, the resource, or the domain meaning of 'behavior case'. An agent cannot distinguish it from siblings like search_past_failures or get_regression_test.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
There is no guidance about when to use this tool versus alternatives, no context, and no examples. The description contains only a phrase with no actionable direction, so an agent receives zero assistance in selecting it correctly.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
search_past_failuresC
search past failures
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description must carry the full burden of behavioral disclosure. It does not state whether this is a read-only query, what data it covers, what it returns, or any side effects or limitations.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is extremely short but not appropriately concise; it is under-specified. It consists only of a tautological phrase that adds no actionable information for an agent.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
With no annotations, no output schema, and no usage guidance, the description is completely inadequate for an agent to decide when to invoke this tool or what behavior to expect. The tool cannot be used correctly based on the provided definition alone.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The tool has zero parameters for the agent to interprethysics, which matches the baseline of 4. No parameter documentation is necessary since the input schema is effectively unrestricted and empty.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description 'search past failures' merely restates the tool name, providing no meaningful elaboration on what constitutes a 'past failure' or what the search returns. It also offers no differentiation from sibling tools like get_regression_test or replay_behavior_case.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description gives no guidance on when to use this tool versus the sibling alternatives. There is no mention of intended scenarios, prerequisites, or exclusions.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
Tool Schema Changelog
Recent tool additions, removals, and schema changes observed during successful MCP inspections.
6 tool updates
v0.1.0- First observed
check_patch_against_memory - First observed
explain_code_history - First observed
get_regression_test - First observed
list_invariants_for_file - First observed
replay_behavior_case - First observed
search_past_failures
TDQS
Scored across 6 tools
Each tool targets a distinct action and resource, but some functional overlap exists: 'search_past_failures' and 'get_regression_test' both relate to historical failures, and 'explain_code_history' and 'check_patch_against_memory' both deal with stored repository memory. The descriptions are terse but generally enough to guide selection.
All tool names follow a consistent lowercase snake_case verb-first pattern: search_, explain_, check_, list_, get_, replay_. The naming style is uniform and predictable across the entire set.
Six tools is well-scoped for a specialized repository memory/invariant server. Each tool has a clear purpose, and the count feels neither thin nor bloated for the apparent domain.
The surface covers the main read/replay workflow: searching failures, explaining history, checking patches, listing invariants, and replaying test cases. The only notable gap is the lack of any tool to record or update memory/invariants, but this may be intentional if ingestion happens outside the server.
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