ImmunoGraph MCP
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TDQS
Scored across 46 tools
Despite 46 tools, descriptions consistently state scope boundaries and name explicit alternatives (predict_mhci vs predict_mhcii vs predict_bcell, compute_consensus vs compute_consensus_batch, remove_duplicate_candidates vs deduplicate_compounds, generate_report vs export_candidates). A few near-neighbors remain easy to confuse at a glance—the synthetic vs authoritative pairs, and create_molstar_view vs visualize_results vs generate_report—but the prose resolves them. No two tools appear to do the same thing.
Every tool is snake_case with a verb-first, object-second pattern (validate_sequence, calculate_surface_accessibility, prepare_ligand, run_docking, export_workflow_trace). Suffix modifiers like _batch and prefixes like compute_/calculate_ are used consistently within their families. Minor quirks (predict_mhci without a separator before the numeral) do not break predictability.
The 46 tools map onto genuinely distinct pipeline stages—sequence, prediction, consensus, constraints, structure, chemistry, docking, reporting, and orchestration—so most earn their place rather than being padding. Still, 46 is heavy for a single MCP surface and forces an agent to plan across many stages, with several parallel 'synthetic/demo' twins adding surface area.
The surface covers the full lifecycle from sequence validation through prediction, normalization, consensus, ranking, constraints, structure mapping, docking, interaction analysis, and reporting/orchestration export. Gaps are minor: no allele/population listing or lookup tools, no async job status or artifact retrieval, and no cleanup or cache management operations.