gnomAD MCP Server

get_structural_variants

Retrieve structural variants within a specified genomic region using gnomAD datasets. Input chromosome, start, stop positions, and dataset ID to analyze genetic variations efficiently.

Instructions

Get structural variants in a genomic region

Input Schema

Name	Required	Description	Default
`chrom`	Yes	Chromosome
`dataset`	No	Dataset ID (gnomad_sv_r4, gnomad_sv_r2_1)	gnomad_sv_r4
`reference_genome`	No	Reference genome	GRCh38
`start`	Yes	Start position
`stop`	Yes	Stop position

Input Schema (JSON Schema)

{
  "properties": {
    "chrom": {
      "description": "Chromosome",
      "type": "string"
    },
    "dataset": {
      "default": "gnomad_sv_r4",
      "description": "Dataset ID (gnomad_sv_r4, gnomad_sv_r2_1)",
      "type": "string"
    },
    "reference_genome": {
      "default": "GRCh38",
      "description": "Reference genome",
      "type": "string"
    },
    "start": {
      "description": "Start position",
      "type": "number"
    },
    "stop": {
      "description": "Stop position",
      "type": "number"
    }
  },
  "required": [
    "chrom",
    "start",
    "stop"
  ],
  "type": "object"
}

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