gnomAD MCP Server

get_region_variants

Retrieve genetic variants within a specified genomic region using chromosome, start, and stop positions. Access variant data from the gnomAD database with customizable dataset and reference genome options.

Instructions

Get variants in a specific genomic region

Input Schema

Name	Required	Description	Default
`chrom`	Yes	Chromosome (1-22, X, Y)
`dataset`	No	Dataset ID	gnomad_r4
`reference_genome`	No	Reference genome	GRCh38
`start`	Yes	Start position
`stop`	Yes	Stop position

Input Schema (JSON Schema)

{
  "properties": {
    "chrom": {
      "description": "Chromosome (1-22, X, Y)",
      "type": "string"
    },
    "dataset": {
      "default": "gnomad_r4",
      "description": "Dataset ID",
      "type": "string"
    },
    "reference_genome": {
      "default": "GRCh38",
      "description": "Reference genome",
      "type": "string"
    },
    "start": {
      "description": "Start position",
      "type": "number"
    },
    "stop": {
      "description": "Stop position",
      "type": "number"
    }
  },
  "required": [
    "chrom",
    "start",
    "stop"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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