Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Features and capabilities supported by this server
| Capability | Details |
|---|---|
| tools | {} |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_string_ids | Map protein names, synonyms, and UniProt identifiers to STRING identifiers. Species parameter uses NCBI taxon IDs (e.g., 9606 for human, 10090 for mouse). |
| get_network | Retrieve protein-protein interaction network for given proteins. Returns network edges with confidence scores. |
| get_interaction_partners | Get all STRING interaction partners for your proteins. Returns a list of interacting proteins with confidence scores. |
| get_enrichment | Perform functional enrichment analysis for a set of proteins. Tests for over-representation in Gene Ontology terms, KEGG pathways, etc. |
| get_ppi_enrichment | Test if your protein set has more interactions than expected by chance. Returns enrichment p-value. |
| get_homology | Get homology information for proteins across species using STRING. |
| get_homology_best | Get the best homology match for proteins in a target species. |
| resolve_proteins | Resolve protein names to their preferred names in STRING database. |
| get_version | Get the current version of the STRING database. |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |