calculate_alignment_score
Calculate alignment scores for biological sequences using substitution matrices to assess sequence similarity and alignment quality in bioinformatics analysis.
Instructions
Calculate the score of a given alignment using a substitution matrix.
Args: alignment_str: Aligned sequences (with gaps) as a formatted string matrix_name: Name of substitution matrix to use (default: 'BLOSUM62')
Returns: Dictionary containing alignment score and statistics
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| alignment_str | Yes | ||
| matrix_name | No | BLOSUM62 |