UniProt MCP Server

[project] name = "uniprot-mcp" version = "0.1.0" description = "Model Context Protocol server that surfaces UniProtKB data as MCP resources, tools, and prompts." readme = "README.md" license = "MIT" authors = [ { name = "Jose Duarte", email = "josepipe0909@gmail.com" } ] keywords = ["mcp", "uniprot", "bioinformatics", "llm", "agent"] classifiers = [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", "Topic :: Scientific/Engineering :: Bio-Informatics", ] requires-python = ">=3.11" dependencies = [ "httpx>=0.28.1", "mcp[cli]>=1.19.0", "pydantic>=2.12.3", "starlette>=0.48.0", "tenacity>=9.1.2", "uvicorn>=0.38.0", "prometheus-client>=0.20.0", ] [project.urls] Homepage = "https://github.com/josefdc/Uniprot-MCP" Repository = "https://github.com/josefdc/Uniprot-MCP" Documentation = "https://github.com/josefdc/Uniprot-MCP#readme" Issues = "https://github.com/josefdc/Uniprot-MCP/issues" [project.scripts] uniprot-mcp = "uniprot_mcp.server:main" uniprot-mcp-http = "uniprot_mcp.__main__:run_http" [dependency-groups] dev = [ "pytest>=8.4.2", "pytest-asyncio>=1.2.0", "pytest-cov>=4.1.0", "anyio[trio]>=4.4.0", "vcrpy>=7.0.0", ] [build-system] requires = ["setuptools>=68.0"] build-backend = "setuptools.build_meta" [tool.setuptools] package-dir = { "" = "src" } [tool.setuptools.packages.find] where = ["src"] [tool.ruff] target-version = "py311" line-length = 100 src = ["src", "tests"] [tool.ruff.lint] select = [ "E", "F", "I", "B", "UP", ] ignore = ["B008"] # Allow function call defaults for MCP decorators [tool.ruff.format] quote-style = "double" [tool.mypy] python_version = "3.11" strict = true mypy_path = ["src"] plugins = [] disallow_subclassing_any = false [[tool.mypy.overrides]] module = ["mcp.*", "httpx.*", "httpx", "pydantic", "tenacity", "vcrpy", "starlette.*", "uvicorn"] ignore_missing_imports = true [tool.pytest.ini_options] addopts = "-q" testpaths = ["tests"]