UniProt MCP Server

## Description <!-- Provide a clear and concise description of your changes --> ## Type of Change <!-- Check all that apply --> - [ ] 🐛 Bug fix (non-breaking change which fixes an issue) - [ ] ✨ New feature (non-breaking change which adds functionality) - [ ] 💥 Breaking change (fix or feature that would cause existing functionality to not work as expected) - [ ] 📚 Documentation update - [ ] 🔧 Chore (refactoring, tooling, dependencies) - [ ] ✅ Test improvements ## Related Issues <!-- Link related issues: Fixes #123, Related to #456 --> Fixes # ## Changes Made <!-- List the specific changes in bullet points --> - - - ## Testing <!-- Describe how you tested these changes --> ### Test Commands Run ```bash # Example commands you ran uv run pytest tests/unit/test_new_feature.py -v uv tool run ruff check . uv tool run mypy src ``` ### Test Results <!-- Paste relevant test output or describe manual testing --> ``` All tests passed Coverage: 85% ``` ## Screenshots (if applicable) <!-- Add screenshots to demonstrate UI changes or new functionality --> ## Checklist <!-- Ensure you've completed all relevant items --> ### Code Quality - [ ] Code follows the project's style guidelines (PEP 8, type hints) - [ ] `uv tool run ruff check .` passes - [ ] `uv tool run ruff format .` has been run - [ ] `uv tool run mypy src` passes with no errors - [ ] All tests pass: `uv run pytest` ### Testing - [ ] Existing tests pass - [ ] New tests added for new functionality - [ ] Integration tests updated (if needed) - [ ] Test coverage maintained or improved ### Documentation - [ ] README updated (if needed) - [ ] CHANGELOG.md updated with changes - [ ] Docstrings added/updated for new functions - [ ] Type hints are complete and accurate ### Compatibility - [ ] Changes are backwards compatible - [ ] If breaking changes, migration guide provided - [ ] server.json updated (if MCP interface changed) ### Review Ready - [ ] Self-reviewed the code - [ ] Comments added for complex logic - [ ] No debugging code or commented-out code left - [ ] Commit messages follow [Conventional Commits](https://www.conventionalcommits.org/) ## Additional Notes <!-- Any additional information for reviewers --> ## Reviewer Guidance <!-- Help reviewers focus on specific areas --> - **Focus areas**: - **Known limitations**: - **Future improvements**: --- By submitting this pull request, I confirm that my contribution is made under the terms of the MIT License.