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Jina AI Remote MCP Server

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by jina-ai

deduplicate_strings

Select semantically unique strings from a list using embeddings and optimization to remove duplicates and find diverse content.

Instructions

Get top-k semantically unique strings from a list using Jina embeddings and submodular optimization. Use this when you have many similar strings and want to select the most diverse subset that covers the semantic space. Perfect for removing duplicates, selecting representative samples, or finding diverse content.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
stringsYesArray of strings to deduplicate
kNoNumber of unique strings to return. If not provided, automatically finds optimal k by looking at diminishing return

Implementation Reference

  • Primary handler implementation for the 'deduplicate_strings' tool. Conditionally registers the tool if enabled, defines input schema, fetches semantic embeddings from Jina AI API, and uses submodular greedy selection to return top-k diverse strings.
    if (isToolEnabled("deduplicate_strings")) {
    	server.tool(
    		"deduplicate_strings",
    		"Get top-k semantically unique strings from a list using Jina embeddings and submodular optimization. Use this when you have many similar strings and want to select the most diverse subset that covers the semantic space. Perfect for removing duplicates, selecting representative samples, or finding diverse content.",
    		{
    			strings: z.array(z.string()).describe("Array of strings to deduplicate"),
    			k: z.number().optional().describe("Number of unique strings to return. If not provided, automatically finds optimal k by looking at diminishing return")
    		},
    		async ({ strings, k }: { strings: string[]; k?: number }) => {
    			try {
    				const props = getProps();
    
    				const tokenError = checkBearerToken(props.bearerToken);
    				if (tokenError) {
    					return tokenError;
    				}
    
    				if (strings.length === 0) {
    					throw new Error("No strings provided for deduplication");
    				}
    
    				if (k !== undefined && (k <= 0 || k > strings.length)) {
    					throw new Error(`Invalid k value: ${k}. Must be between 1 and ${strings.length}`);
    				}
    
    				// Get embeddings from Jina API
    				const response = await fetch('https://api.jina.ai/v1/embeddings', {
    					method: 'POST',
    					headers: {
    						'Accept': 'application/json',
    						'Content-Type': 'application/json',
    						'Authorization': `Bearer ${props.bearerToken}`,
    					},
    					body: JSON.stringify({
    						model: 'jina-embeddings-v3',
    						task: 'text-matching',
    						input: strings
    					}),
    				});
    
    				if (!response.ok) {
    					return handleApiError(response, "Getting embeddings");
    				}
    
    				const data = await response.json() as any;
    
    				if (!data.data || !Array.isArray(data.data)) {
    					throw new Error("Invalid response format from embeddings API");
    				}
    
    				// Extract embeddings
    				const embeddings = data.data.map((item: any) => item.embedding);
    
    				// Use submodular optimization to select diverse strings
    				let selectedIndices: number[];
    				let optimalK: number;
    				let values: number[];
    
    				if (k !== undefined) {
    					// Use specified k
    					selectedIndices = lazyGreedySelection(embeddings, k);
    					values = [];
    				} else {
    					// Automatically find optimal k using saturation point
    					const result = lazyGreedySelectionWithSaturation(embeddings);
    					selectedIndices = result.selected;
    					values = result.values;
    				}
    
    				// Get the selected strings
    				const selectedStrings = selectedIndices.map(idx => ({
    					index: idx,
    					text: strings[idx]
    				}));
    
    				// Return each deduplicated string as individual text items for consistency
    				const contentItems: Array<{ type: 'text'; text: string }> = [];
    
    				for (const selectedString of selectedStrings) {
    					contentItems.push({
    						type: "text" as const,
    						text: yamlStringify(selectedString),
    					});
    				}
    
    				return {
    					content: contentItems,
    				};
    			} catch (error) {
    				return createErrorResponse(`Error: ${error instanceof Error ? error.message : String(error)}`);
    			}
    		},
    	);
    }
  • Zod input schema validation for the deduplicate_strings tool parameters.
    {
    	strings: z.array(z.string()).describe("Array of strings to deduplicate"),
    	k: z.number().optional().describe("Number of unique strings to return. If not provided, automatically finds optimal k by looking at diminishing return")
    },
  • src/index.ts:100-102 (registration)
    Calls registerJinaTools which conditionally registers the deduplicate_strings tool based on enabledTools filter. The tool is listed in TOOL_TAGS.rerank and ALL_TOOLS.
    registerJinaTools(server, () => currentProps, enabledTools);
    
    return server;
  • Key helper functions for submodular optimization: lazyGreedySelection for fixed-k diverse selection from embeddings, and lazyGreedySelectionWithSaturation for automatic k via saturation detection. Used directly in deduplicate_strings handler.
    export function lazyGreedySelection(embeddings: number[][], k: number): number[] {
        const n = embeddings.length;
        if (k >= n) return Array.from({ length: n }, (_, i) => i);
    
        const selected: number[] = [];
        const remaining = new Set(Array.from({ length: n }, (_, i) => i));
    
        // Pre-compute similarity matrix
        const similarityMatrix: number[][] = [];
        for (let i = 0; i < n; i++) {
            similarityMatrix[i] = [];
            for (let j = 0; j < n; j++) {
                // Clamp to non-negative to ensure monotone submodularity of facility-location objective
                const sim = cosineSimilarity(embeddings[i], embeddings[j]);
                similarityMatrix[i][j] = sim > 0 ? sim : 0;
            }
        }
    
        // Maintain current coverage vector (max similarity to selected set for each element)
        const currentCoverage = new Array(n).fill(0);
    
        // Priority queue implementation using array (simplified)
        const pq: Array<[number, number, number]> = [];
    
        // Initialize priority queue
        for (let i = 0; i < n; i++) {
            const gain = computeMarginalGainDiversity(i, currentCoverage, similarityMatrix);
            pq.push([-gain, 0, i]);
        }
    
        // Sort by gain (descending)
        pq.sort((a, b) => a[0] - b[0]);
    
        for (let iteration = 0; iteration < k; iteration++) {
            while (pq.length > 0) {
                const [negGain, lastUpdated, bestIdx] = pq.shift()!;
    
                if (!remaining.has(bestIdx)) continue;
    
                if (lastUpdated === iteration) {
                    selected.push(bestIdx);
                    remaining.delete(bestIdx);
                    // Update coverage in O(n)
                    const row = similarityMatrix[bestIdx];
                    for (let i = 0; i < n; i++) {
                        if (row[i] > currentCoverage[i]) currentCoverage[i] = row[i];
                    }
                    break;
                }
    
                const currentGain = computeMarginalGainDiversity(bestIdx, currentCoverage, similarityMatrix);
                pq.push([-currentGain, iteration, bestIdx]);
                pq.sort((a, b) => a[0] - b[0]);
            }
        }
    
        return selected;
    }
    
    export function lazyGreedySelectionWithSaturation(
        embeddings: number[][],
        threshold: number = 1e-2
    ): { selected: number[], optimalK: number, values: number[] } {
        const n = embeddings.length;
    
        const selected: number[] = [];
        const remaining = new Set(Array.from({ length: n }, (_, i) => i));
        const values: number[] = [];
    
        // Pre-compute similarity matrix
        const similarityMatrix: number[][] = [];
        for (let i = 0; i < n; i++) {
            similarityMatrix[i] = [];
            for (let j = 0; j < n; j++) {
                const sim = cosineSimilarity(embeddings[i], embeddings[j]);
                similarityMatrix[i][j] = sim > 0 ? sim : 0;
            }
        }
    
        const currentCoverage = new Array(n).fill(0);
    
        // Priority queue implementation using array (simplified)
        const pq: Array<[number, number, number]> = [];
    
        // Initialize priority queue
        for (let i = 0; i < n; i++) {
            const gain = computeMarginalGainDiversity(i, currentCoverage, similarityMatrix);
            pq.push([-gain, 0, i]);
        }
    
        // Sort by gain (descending)
        pq.sort((a, b) => a[0] - b[0]);
    
        let earlyStopK: number | null = null;
        for (let iteration = 0; iteration < n; iteration++) {
            while (pq.length > 0) {
                const [negGain, lastUpdated, bestIdx] = pq.shift()!;
    
                if (!remaining.has(bestIdx)) continue;
    
                if (lastUpdated === iteration) {
                    selected.push(bestIdx);
                    remaining.delete(bestIdx);
    
                    // Compute current function value (coverage)
                    const row = similarityMatrix[bestIdx];
                    for (let i = 0; i < n; i++) {
                        if (row[i] > currentCoverage[i]) currentCoverage[i] = row[i];
                    }
                    const functionValue = currentCoverage.reduce((sum, val) => sum + val, 0) / n;
                    values.push(functionValue);
    
                    // Early stop when the marginal gain (delta of normalized objective) falls below threshold
                    if (values.length >= 2) {
                        const delta = values[values.length - 1] - values[values.length - 2];
                        if (delta < threshold) {
                            earlyStopK = values.length; // k is count of selected items
                        }
                    }
    
                    break;
                }
    
                const currentGain = computeMarginalGainDiversity(bestIdx, currentCoverage, similarityMatrix);
                pq.push([-currentGain, iteration, bestIdx]);
                pq.sort((a, b) => a[0] - b[0]);
            }
            if (earlyStopK !== null) break;
        }
    
        // Choose k: prefer early stop detection; otherwise, use all collected values
        const optimalK = earlyStopK ?? values.length;
        const finalSelected = selected.slice(0, optimalK);
    
        return { selected: finalSelected, optimalK, values };
    }
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It effectively describes the tool's behavior: using Jina embeddings and submodular optimization for semantic deduplication, returning top-k results, and automatically determining optimal k if not provided. However, it doesn't mention performance characteristics like computational complexity or rate limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is perfectly structured and concise: three sentences that each earn their place. The first states the core functionality, the second provides usage guidelines, and the third lists specific applications. No wasted words, front-loaded with essential information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with no annotations and no output schema, the description provides good context about what the tool does and when to use it. However, it doesn't describe the return format or what 'semantically unique' means in practice. Given the complexity of semantic deduplication, more detail about the output would be helpful.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents both parameters thoroughly. The description adds some context about the 'k' parameter's automatic optimization behavior, but doesn't provide additional semantic meaning beyond what's in the schema descriptions. This meets the baseline for high schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose with specific verbs ('get top-k semantically unique strings') and resources ('from a list using Jina embeddings and submodular optimization'). It distinguishes itself from siblings like deduplicate_images by focusing on strings rather than images, and from other tools by its semantic deduplication approach.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use this tool ('when you have many similar strings and want to select the most diverse subset that covers the semantic space') and provides three specific use cases ('removing duplicates, selecting representative samples, or finding diverse content'). It differentiates from siblings by not overlapping with their domains (e.g., images, web search).

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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