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Noctua MCP Server

Official
by geneontology
pyproject.toml1.98 kB
[build-system] requires = ["hatchling", "uv-dynamic-versioning"] build-backend = "hatchling.build" [project] name = "noctua_mcp" description = "MCP server for Barista to control Noctua editing" authors = [ {name = "My Name", email = "my-name@my-org.org"}, ] license = "BSD-3-Clause" license-files = ["LICENSE"] readme = "README.md" requires-python = ">=3.10,<4.0" dynamic = ["version"] dependencies = [ "typer >= 0.9.0", "linkml-runtime >=1.9.4", "fastmcp>=2.12.4", "pytest-asyncio>=0.23", "noctua", ] [dependency-groups] dev = [ "linkml>=1.9.3", "mypy>=1.17.1", "ruff>=0.4.8", "mkdocs-material>=8.2.8", "mkdocs-mermaid2-plugin>=1.1.1", "jupyter>=1.0.0", "mknotebooks>= 0.8.0", ] [project.scripts] noctua-mcp = "noctua_mcp.cli:main" # See https://hatch.pypa.io/latest/config/build/#file-selection for how to # explicitly include files other than default into the build distributions. [tool.hatch.metadata] allow-direct-references = true [tool.hatch.version] source = "uv-dynamic-versioning" # Ref.: https://github.com/ninoseki/uv-dynamic-versioning/ [tool.uv-dynamic-versioning] vcs = "git" style = "pep440" fallback-version = "0.0.0" # Ref.: https://docs.pytest.org/en/stable/reference/reference.html#configuration-options [tool.pytest.ini_options] testpaths = ["tests"] # Ref.: https://github.com/codespell-project/codespell [tool.codespell] skip = [ "LICENSE", "pyproject.toml", "uv.lock", "project/*", "src/noctua_mcp/datamodel/noctua_mcp_pydantic.py", "src/noctua_mcp/datamodel/noctua_mcp.py", ] # Reminder: words have to be lowercased for the ignore-words-list ignore-words-list = "linke" quiet-level = 3 # Ref.: https://github.com/crate-ci/typos (spell checker) [tool.typos.default.extend-words] linke = "linke" [tool.typos.files] extend-exclude = [ "LICENSE", "uv.lock", "pyproject.toml", "project/*", "src/noctua_mcp/datamodel/noctua_mcp_pydantic.py", "src/noctua_mcp/datamodel/noctua_mcp.py", ]

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