justfile•2.58 kB
# ============ Hint for for Windows Users ============
# On Windows the "sh" shell that comes with Git for Windows should be used.
# If it is not on path, provide the path to the executable in the following line.
#set windows-shell := ["C:/Program Files/Git/usr/bin/sh", "-cu"]
# ============ Variables used in recipes ============
# Set shebang line for cross-platform Python recipes (assumes presence of launcher on Windows)
shebang := if os() == 'windows' {
'py'
} else {
'/usr/bin/env python3'
}
# ============== Project recipes ==============
# List all commands as default command. The prefix "_" hides the command.
_default: _status
@just --list
# Initialize a new project (use this for projects not yet under version control)
[group('project management')]
setup: _git-init _ai-instructions install _git-add
git commit -m "Initialise git with minimal project" -a
# Install project dependencies
[group('project management')]
install:
uv sync --group dev
# Run all tests
[group('model development')]
test: pytest mypy format
test-full: test pytest-integration
pytest:
uv run pytest
# include integration tests
pytest-integration:
$(RUN) pytest -m ""
doctest:
uv run pytest --doctest-modules src
mypy:
uv run mypy src tests
format:
uv run ruff check .
# ============== Hidden internal recipes ==============
_status:
@echo "OK"
# Update project template
_update-template:
copier update --trust --skip-answered
# Run documentation server
_serve:
uv run mkdocs serve
# Initialize git repository
_git-init:
git init
# Add files to git
_git-add:
git add .
# Commit files to git
_git-commit:
git commit -m 'chore: just setup was run' -a
# Show git status
_git-status:
git status
goosehints:
[ -f .goosehints ] || ln -s CLAUDE.md .goosehints
copilot-instructions:
[ -f .github/copilot-instructions.md ] || cd .github && ln -s ../CLAUDE.md copilot-instructions.md
_ai-instructions: goosehints copilot-instructions
gh-add-topics:
gh repo edit --add-topic "noctua-mcp,monarchinitiative,linkml"
gh-add-secrets:
gh secret set PAT_FOR_PR --body "$PAT_FOR_PR"
gh secret set ANTHROPIC_API_KEY --body "$ANTHROPIC_API_KEY"
gh secret set OPENAI_API_KEY --body "$OPENAI_API_KEY"
gh secret set CBORG_API_KEY --body "$CBORG_API_KEY"
gh secret set CLAUDE_CODE_OATH_TOKEN --body "$CLAUDE_CODE_OATH_TOKEN"
gh-invite-the-dragon:
gh api repos/geneontology/noctua-mcp/collaborators/dragon-ai-agent -X PUT -f permission=push
# ============== Include project-specific recipes ==============
import "project.justfile"