PubMed MCP Server

.PHONY: help install install-dev test test-verbose test-coverage lint format clean build run docker-build docker-run # Default target help: @echo "PubMed MCP Server - Available Commands:" @echo "" @echo "Development:" @echo " install - Install production dependencies" @echo " install-dev - Install development dependencies" @echo " run - Run the server" @echo "" @echo "Testing:" @echo " test - Run tests" @echo " test-verbose - Run tests with verbose output" @echo " test-coverage - Run tests with coverage report" @echo "" @echo "Code Quality:" @echo " lint - Run code linting" @echo " format - Format code with black" @echo "" @echo "Build & Clean:" @echo " build - Build package" @echo " clean - Clean build artifacts" @echo "" @echo "Docker:" @echo " docker-build - Build Docker image" @echo " docker-run - Run Docker container" # Development setup install: pip install -r requirements.txt install-dev: install pip install -e . pip install black isort mypy flake8 # Run the server run: python -m src.main # Testing test: python -m pytest tests/ -v test-verbose: python -m pytest tests/ -v --tb=long test-coverage: python -m pytest tests/ --cov=src --cov-report=html --cov-report=term-missing # Code quality lint: flake8 src/ tests/ mypy src/ format: black src/ tests/ isort src/ tests/ # Build and clean build: python -m build clean: rm -rf build/ rm -rf dist/ rm -rf *.egg-info/ rm -rf htmlcov/ rm -rf .coverage find . -type d -name __pycache__ -exec rm -rf {} + find . -type f -name "*.pyc" -delete # Docker support docker-build: docker build -t pubmed-mcp . docker-run: docker run -it --rm -e PUBMED_API_KEY=$(PUBMED_API_KEY) -e PUBMED_EMAIL=$(PUBMED_EMAIL) pubmed-mcp