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# Pull Request ## 📝 Description Brief description of the changes made. ## 🔧 Type of Change - [ ] 🐛 Bug fix (non-breaking change which fixes an issue) - [ ] ✨ New feature (non-breaking change which adds functionality) - [ ] 💥 Breaking change (fix or feature that would cause existing functionality to not work as expected) - [ ] 📚 Documentation update - [ ] 🧬 New MCP server - [ ] 🔧 Maintenance (refactoring, dependencies, etc.) ## 🧪 Affected Repositories - [ ] bio-mcp-blast - [ ] bio-mcp-samtools - [ ] bio-mcp-bwa - [ ] bio-mcp-seqkit - [ ] bio-mcp-queue - [ ] bio-mcp-template - [ ] Documentation - [ ] Organization files ## 🧬 Testing - [ ] Tests pass locally with `pytest` - [ ] Added tests for new functionality - [ ] Tested with real bioinformatics data - [ ] Tested in Docker environment - [ ] Tested queue integration (if applicable) - [ ] Manual testing completed ## ✅ Checklist - [ ] Code follows the project's style guidelines - [ ] Self-review of code completed - [ ] Documentation updated (if needed) - [ ] Added appropriate error handling - [ ] File size limits considered - [ ] Security implications reviewed - [ ] No sensitive data in logs - [ ] Temporary files properly cleaned up ## 🔬 Bioinformatics Context - [ ] Tool parameters match biological conventions - [ ] File format handling is correct - [ ] Error messages are scientifically meaningful - [ ] Edge cases in biological data considered ## 📊 Performance Impact - [ ] Memory usage considered for large files - [ ] Timeout settings appropriate for data size - [ ] No performance regression introduced - [ ] Scalability implications reviewed ## 📝 Additional Notes Any additional information that reviewers should know about this PR. ## 🔗 Related Issues Closes #(issue_number) Related to #(issue_number)

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