Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| BLASTDB | No | Path to BLAST databases directory | |
| BIO_MCP_TIMEOUT | No | Timeout in seconds (default: 5 minutes) | 300 |
| BIO_MCP_QUEUE_URL | No | Queue system URL (for queue mode) | http://localhost:8000 |
| BLAST_NUM_THREADS | No | Number of CPU cores to use for BLAST searches | |
| BIO_MCP_BLAST_PATH | No | BLAST executable path | blastn |
| BIO_MCP_MAX_FILE_SIZE | No | Maximum file size (default: 100MB) | 100000000 |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |