Bio-MCP BLAST

name: 🧬 New Tool Request description: Request a new bioinformatics tool MCP server title: "[NEW TOOL] " labels: ["new-tool", "enhancement"] assignees: [] body: - type: markdown attributes: value: | Thanks for suggesting a new bioinformatics tool! This helps us prioritize which tools to implement next. - type: input id: tool-name attributes: label: Tool Name description: Name of the bioinformatics tool placeholder: "e.g., bcftools, FastQC, SPAdes" validations: required: true - type: input id: tool-website attributes: label: Official Website description: Link to the tool's official website or documentation placeholder: "https://..." validations: required: true - type: input id: tool-license attributes: label: License description: Software license (must be open source) placeholder: "e.g., MIT, GPL-3.0, Apache-2.0" validations: required: true - type: dropdown id: installation-method attributes: label: Installation Method description: How is this tool typically installed? options: - conda/bioconda - apt/yum package manager - pip/PyPI - Source compilation - Docker only - Multiple methods default: 0 validations: required: true - type: textarea id: use-cases attributes: label: Use Cases description: Describe the main use cases for this tool placeholder: | 1. Variant calling from BAM files 2. Quality filtering of variants 3. Format conversion (VCF to BCF) validations: required: true - type: textarea id: priority-functions attributes: label: Priority Functions description: Which tool functions are most important to expose via MCP? placeholder: | 1. bcftools call - variant calling 2. bcftools filter - quality filtering 3. bcftools view - format conversion validations: required: true - type: checkboxes id: file-types attributes: label: Input/Output File Types description: What file types does this tool work with? options: - label: FASTA/FASTQ - label: BAM/SAM/CRAM - label: VCF/BCF - label: BED/GFF/GTF - label: Custom formats - label: Text files - label: Binary formats - type: dropdown id: file-sizes attributes: label: Typical File Sizes description: What size files does this tool typically process? options: - Small (< 100MB) - Medium (100MB - 10GB) - Large (10GB - 100GB) - Very Large (> 100GB) - Variable default: 4 validations: required: true - type: dropdown id: runtime attributes: label: Typical Runtime description: How long does this tool typically take to run? options: - Seconds - Minutes (< 30) - Long (30 min - 2 hours) - Very Long (> 2 hours) - Variable default: 4 validations: required: true - type: dropdown id: priority attributes: label: Integration Priority description: How important is this tool for common workflows? options: - High - Essential for common workflows - Medium - Useful addition - Low - Nice to have default: 1 validations: required: true - type: checkboxes id: execution-mode attributes: label: Execution Mode description: Which execution modes would be suitable? options: - label: Immediate execution (< 5 minutes) - label: Queue system (long-running jobs) - label: Both modes depending on parameters - type: textarea id: additional-notes attributes: label: Additional Notes description: Any special considerations, dependencies, or implementation notes placeholder: "Special dependencies, GPU requirements, memory needs, etc."