index.html•34.7 kB
<!doctype html>
<html lang="en" class="no-js">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<link rel="canonical" href="https://SaptaDey.github.io/Adaptive-Graph-of-Thoughts-MCP-server/">
<link rel="next" href="getting_started/">
<link rel="icon" href="assets/images/favicon.png">
<meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.6.14">
<title>Home - Adaptive Graph of Thoughts Documentation</title>
<link rel="stylesheet" href="assets/stylesheets/main.342714a4.min.css">
<link rel="stylesheet" href="assets/stylesheets/palette.06af60db.min.css">
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&display=fallback">
<style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
<link rel="stylesheet" href="assets/stylesheets/custom.css">
<script>__md_scope=new URL(".",location),__md_hash=e=>[...e].reduce(((e,_)=>(e<<5)-e+_.charCodeAt(0)),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
</head>
<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber">
<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
<label class="md-overlay" for="__drawer"></label>
<div data-md-component="skip">
<a href="#adaptive-graph-of-thoughts" class="md-skip">
Skip to content
</a>
</div>
<div data-md-component="announce">
</div>
<header class="md-header" data-md-component="header">
<nav class="md-header__inner md-grid" aria-label="Header">
<a href="." title="Adaptive Graph of Thoughts Documentation" class="md-header__button md-logo" aria-label="Adaptive Graph of Thoughts Documentation" data-md-component="logo">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 8a3 3 0 0 0 3-3 3 3 0 0 0-3-3 3 3 0 0 0-3 3 3 3 0 0 0 3 3m0 3.54C9.64 9.35 6.5 8 3 8v11c3.5 0 6.64 1.35 9 3.54 2.36-2.19 5.5-3.54 9-3.54V8c-3.5 0-6.64 1.35-9 3.54"/></svg>
</a>
<label class="md-header__button md-icon" for="__drawer">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3zm0 5h18v2H3zm0 5h18v2H3z"/></svg>
</label>
<div class="md-header__title" data-md-component="header-title">
<div class="md-header__ellipsis">
<div class="md-header__topic">
<span class="md-ellipsis">
Adaptive Graph of Thoughts Documentation
</span>
</div>
<div class="md-header__topic" data-md-component="header-topic">
<span class="md-ellipsis">
Home
</span>
</div>
</div>
</div>
<form class="md-header__option" data-md-component="palette">
<input class="md-option" data-md-color-media="" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber" aria-label="Switch to dark mode" type="radio" name="__palette" id="__palette_0">
<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 8a4 4 0 0 0-4 4 4 4 0 0 0 4 4 4 4 0 0 0 4-4 4 4 0 0 0-4-4m0 10a6 6 0 0 1-6-6 6 6 0 0 1 6-6 6 6 0 0 1 6 6 6 6 0 0 1-6 6m8-9.31V4h-4.69L12 .69 8.69 4H4v4.69L.69 12 4 15.31V20h4.69L12 23.31 15.31 20H20v-4.69L23.31 12z"/></svg>
</label>
<input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="blue-grey" data-md-color-accent="orange" aria-label="Switch to light mode" type="radio" name="__palette" id="__palette_1">
<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_0" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 18c-.89 0-1.74-.2-2.5-.55C11.56 16.5 13 14.42 13 12s-1.44-4.5-3.5-5.45C10.26 6.2 11.11 6 12 6a6 6 0 0 1 6 6 6 6 0 0 1-6 6m8-9.31V4h-4.69L12 .69 8.69 4H4v4.69L.69 12 4 15.31V20h4.69L12 23.31 15.31 20H20v-4.69L23.31 12z"/></svg>
</label>
</form>
<script>var palette=__md_get("__palette");if(palette&&palette.color){if("(prefers-color-scheme)"===palette.color.media){var media=matchMedia("(prefers-color-scheme: light)"),input=document.querySelector(media.matches?"[data-md-color-media='(prefers-color-scheme: light)']":"[data-md-color-media='(prefers-color-scheme: dark)']");palette.color.media=input.getAttribute("data-md-color-media"),palette.color.scheme=input.getAttribute("data-md-color-scheme"),palette.color.primary=input.getAttribute("data-md-color-primary"),palette.color.accent=input.getAttribute("data-md-color-accent")}for(var[key,value]of Object.entries(palette.color))document.body.setAttribute("data-md-color-"+key,value)}</script>
<label class="md-header__button md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"/></svg>
</label>
<div class="md-search" data-md-component="search" role="dialog">
<label class="md-search__overlay" for="__search"></label>
<div class="md-search__inner" role="search">
<form class="md-search__form" name="search">
<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
<label class="md-search__icon md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"/></svg>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11z"/></svg>
</label>
<nav class="md-search__options" aria-label="Search">
<button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"/></svg>
</button>
</nav>
<div class="md-search__suggest" data-md-component="search-suggest"></div>
</form>
<div class="md-search__output">
<div class="md-search__scrollwrap" tabindex="0" data-md-scrollfix>
<div class="md-search-result" data-md-component="search-result">
<div class="md-search-result__meta">
Initializing search
</div>
<ol class="md-search-result__list" role="presentation"></ol>
</div>
</div>
</div>
</div>
</div>
<div class="md-header__source">
<a href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.2 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
</div>
<div class="md-source__repository">
Adaptive-Graph-of-Thoughts-MCP-server
</div>
</a>
</div>
</nav>
</header>
<div class="md-container" data-md-component="container">
<nav class="md-tabs" aria-label="Tabs" data-md-component="tabs">
<div class="md-grid">
<ul class="md-tabs__list">
<li class="md-tabs__item md-tabs__item--active">
<a href="." class="md-tabs__link">
Home
</a>
</li>
<li class="md-tabs__item">
<a href="getting_started/" class="md-tabs__link">
Getting Started
</a>
</li>
<li class="md-tabs__item">
<a href="configuration/" class="md-tabs__link">
Configuration
</a>
</li>
<li class="md-tabs__item">
<a href="usage/" class="md-tabs__link">
Usage
</a>
</li>
<li class="md-tabs__item">
<a href="vscode_extension/" class="md-tabs__link">
VS Code Extension
</a>
</li>
<li class="md-tabs__item">
<a href="claude_action/" class="md-tabs__link">
Claude Desktop Action
</a>
</li>
<li class="md-tabs__item">
<a href="api/mcp_api/" class="md-tabs__link">
API Reference
</a>
</li>
<li class="md-tabs__item">
<a href="extending/custom_stages/" class="md-tabs__link">
Extending Adaptive Graph of Thoughts
</a>
</li>
<li class="md-tabs__item">
<a href="CONTRIBUTING/" class="md-tabs__link">
Contributing
</a>
</li>
<li class="md-tabs__item">
<a href="ROADMAP/" class="md-tabs__link">
Roadmap
</a>
</li>
</ul>
</div>
</nav>
<main class="md-main" data-md-component="main">
<div class="md-main__inner md-grid">
<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
<div class="md-sidebar__scrollwrap">
<div class="md-sidebar__inner">
<nav class="md-nav md-nav--primary md-nav--lifted md-nav--integrated" aria-label="Navigation" data-md-level="0">
<label class="md-nav__title" for="__drawer">
<a href="." title="Adaptive Graph of Thoughts Documentation" class="md-nav__button md-logo" aria-label="Adaptive Graph of Thoughts Documentation" data-md-component="logo">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 8a3 3 0 0 0 3-3 3 3 0 0 0-3-3 3 3 0 0 0-3 3 3 3 0 0 0 3 3m0 3.54C9.64 9.35 6.5 8 3 8v11c3.5 0 6.64 1.35 9 3.54 2.36-2.19 5.5-3.54 9-3.54V8c-3.5 0-6.64 1.35-9 3.54"/></svg>
</a>
Adaptive Graph of Thoughts Documentation
</label>
<div class="md-nav__source">
<a href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.7.2 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
</div>
<div class="md-source__repository">
Adaptive-Graph-of-Thoughts-MCP-server
</div>
</a>
</div>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item md-nav__item--active">
<input class="md-nav__toggle md-toggle" type="checkbox" id="__toc">
<label class="md-nav__link md-nav__link--active" for="__toc">
<span class="md-ellipsis">
Home
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<a href="." class="md-nav__link md-nav__link--active">
<span class="md-ellipsis">
Home
</span>
</a>
<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
<label class="md-nav__title" for="__toc">
<span class="md-nav__icon md-icon"></span>
Table of contents
</label>
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
<li class="md-nav__item">
<a href="#overview" class="md-nav__link">
<span class="md-ellipsis">
🔍 Overview
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#key-features" class="md-nav__link">
<span class="md-ellipsis">
🌟 Key Features
</span>
</a>
<nav class="md-nav" aria-label="🌟 Key Features">
<ul class="md-nav__list">
<li class="md-nav__item">
<a href="#8-stage-reasoning-pipeline" class="md-nav__link">
<span class="md-ellipsis">
8-Stage Reasoning Pipeline
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#advanced-technical-capabilities" class="md-nav__link">
<span class="md-ellipsis">
Advanced Technical Capabilities
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#architectural-highlights" class="md-nav__link">
<span class="md-ellipsis">
Architectural Highlights
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="#technology-stack" class="md-nav__link">
<span class="md-ellipsis">
🛠️ Technology Stack
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="getting_started/" class="md-nav__link">
<span class="md-ellipsis">
Getting Started
</span>
</a>
</li>
<li class="md-nav__item">
<a href="configuration/" class="md-nav__link">
<span class="md-ellipsis">
Configuration
</span>
</a>
</li>
<li class="md-nav__item">
<a href="usage/" class="md-nav__link">
<span class="md-ellipsis">
Usage
</span>
</a>
</li>
<li class="md-nav__item">
<a href="vscode_extension/" class="md-nav__link">
<span class="md-ellipsis">
VS Code Extension
</span>
</a>
</li>
<li class="md-nav__item">
<a href="claude_action/" class="md-nav__link">
<span class="md-ellipsis">
Claude Desktop Action
</span>
</a>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle md-toggle--indeterminate" type="checkbox" id="__nav_7" >
<label class="md-nav__link" for="__nav_7" id="__nav_7_label" tabindex="0">
<span class="md-ellipsis">
API Reference
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_7_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_7">
<span class="md-nav__icon md-icon"></span>
API Reference
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="api/mcp_api/" class="md-nav__link">
<span class="md-ellipsis">
MCP API
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle md-toggle--indeterminate" type="checkbox" id="__nav_8" >
<label class="md-nav__link" for="__nav_8" id="__nav_8_label" tabindex="0">
<span class="md-ellipsis">
Extending Adaptive Graph of Thoughts
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_8_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_8">
<span class="md-nav__icon md-icon"></span>
Extending Adaptive Graph of Thoughts
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="extending/custom_stages/" class="md-nav__link">
<span class="md-ellipsis">
Custom Stages
</span>
</a>
</li>
<li class="md-nav__item">
<a href="extending_with_claude/" class="md-nav__link">
<span class="md-ellipsis">
Claude API Integration
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="CONTRIBUTING/" class="md-nav__link">
<span class="md-ellipsis">
Contributing
</span>
</a>
</li>
<li class="md-nav__item">
<a href="ROADMAP/" class="md-nav__link">
<span class="md-ellipsis">
Roadmap
</span>
</a>
</li>
</ul>
</nav>
</div>
</div>
</div>
<div class="md-content" data-md-component="content">
<article class="md-content__inner md-typeset">
<h1 id="adaptive-graph-of-thoughts">🧠 Adaptive Graph of Thoughts</h1>
<p><strong>Transforming Scientific Discovery with Intelligent Graph-Based Reasoning</strong></p>
<p><a class="md-button md-button--primary" href="getting_started/">Get Started</a>
<a class="md-button" href="#key-features">Explore Features</a>
<a class="md-button" href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server">View on GitHub</a></p>
<h4 align="center"><strong>Intelligent Scientific Reasoning through Graph-of-Thoughts</strong></h4>
<p align="center">
<a href="https://saptadey.github.io/Adaptive-Graph-of-Thoughts-MCP-server/"><img src="https://img.shields.io/badge/version-0.1.0-blue.svg" alt="Version"></a>
<a href="https://www.python.org/downloads/"><img src="https://img.shields.io/badge/python-3.11+-blue.svg" alt="Python"></a>
<a href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server/blob/main/LICENSE"><img src="https://img.shields.io/badge/license-Apache_2.0-green.svg" alt="License"></a>
<a href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server/blob/main/Dockerfile"><img src="https://img.shields.io/badge/docker-ready-brightgreen.svg" alt="Docker"></a>
<a href="https://fastapi.tiangolo.com"><img src="https://img.shields.io/badge/FastAPI-0.111.0-009688.svg" alt="FastAPI"></a>
<a href="https://networkx.org"><img src="https://img.shields.io/badge/NetworkX-3.3-orange.svg" alt="NetworkX"></a>
<a href="https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server/blob/main/.md/CHANGELOG.md"><img src="https://img.shields.io/badge/last_updated-June_2025-lightgrey.svg" alt="Last Updated"></a>
</p>
<div align="center">
<p><strong>🚀 Next-Generation AI Reasoning Framework for Scientific Research</strong></p>
<p><em>Leveraging graph structures to transform how AI systems approach scientific reasoning</em></p>
</div>
<h2 id="overview">🔍 Overview</h2>
<p>Adaptive Graph of Thoughts leverages a <strong>Neo4j graph database</strong> to perform sophisticated scientific reasoning, with graph operations managed within its pipeline stages. It implements the <strong>Model Context Protocol (MCP)</strong> to integrate with AI applications like Claude Desktop, providing an Advanced Scientific Reasoning Graph-of-Thoughts (ASR-GoT) framework designed for complex research tasks.</p>
<p><strong>Key highlights:</strong>
- Process complex scientific queries using graph-based reasoning
- Dynamic confidence scoring with multi-dimensional evaluations
- Built with modern Python and FastAPI for high performance
- Dockerized for easy deployment
- Modular design for extensibility and customization
- Integration with Claude Desktop via MCP protocol</p>
<h2 id="key-features">🌟 Key Features</h2>
<h3 id="8-stage-reasoning-pipeline">8-Stage Reasoning Pipeline</h3>
<pre class="mermaid"><code>graph TD
A[🌱 Stage 1: Initialization] --> B[🧩 Stage 2: Decomposition]
B --> C[🔬 Stage 3: Hypothesis/Planning]
C --> D[📊 Stage 4: Evidence Integration]
D --> E[✂️ Stage 5: Pruning/Merging]
E --> F[🔍 Stage 6: Subgraph Extraction]
F --> G[📝 Stage 7: Composition]
G --> H[🤔 Stage 8: Reflection]
A1[Create root node<br/>Set initial confidence<br/>Define graph structure] --> A
B1[Break into dimensions<br/>Identify components<br/>Create dimensional nodes] --> B
C1[Generate hypotheses<br/>Create reasoning strategy<br/>Set falsification criteria] --> C
D1[Gather evidence<br/>Link to hypotheses<br/>Update confidence scores] --> D
E1[Remove low-value elements<br/>Consolidate similar nodes<br/>Optimize structure] --> E
F1[Identify relevant portions<br/>Focus on high-value paths<br/>Create targeted subgraphs] --> F
G1[Synthesize findings<br/>Create coherent insights<br/>Generate comprehensive answer] --> G
H1[Evaluate reasoning quality<br/>Identify improvements<br/>Final confidence assessment] --> H
style A fill:#e1f5fe
style B fill:#f3e5f5
style C fill:#e8f5e8
style D fill:#fff3e0
style E fill:#ffebee
style F fill:#f1f8e9
style G fill:#e3f2fd
style H fill:#fce4ec</code></pre>
<p>The core reasoning process follows a sophisticated 8-stage pipeline:</p>
<ol>
<li><strong>🌱 Initialization</strong></li>
<li>Creates root node from query with multi-dimensional confidence vector</li>
<li>Establishes initial graph structure with proper metadata</li>
<li>
<p>Sets baseline confidence across empirical, theoretical, methodological, and consensus dimensions</p>
</li>
<li>
<p><strong>🧩 Decomposition</strong></p>
</li>
<li>Breaks query into key dimensions: Scope, Objectives, Constraints, Data Needs, Use Cases</li>
<li>Identifies potential biases and knowledge gaps from the outset</li>
<li>
<p>Creates dimensional nodes with initial confidence assessments</p>
</li>
<li>
<p><strong>🔬 Hypothesis/Planning</strong></p>
</li>
<li>Generates 3-5 hypotheses per dimension with explicit falsification criteria</li>
<li>Creates detailed execution plans for each hypothesis</li>
<li>
<p>Tags with disciplinary provenance and impact estimates</p>
</li>
<li>
<p><strong>📊 Evidence Integration</strong></p>
</li>
<li>Iteratively selects hypotheses based on confidence-to-cost ratio and impact</li>
<li>Gathers and links evidence using typed edges (causal, temporal, correlative)</li>
<li>
<p>Updates confidence vectors using Bayesian methods with statistical power assessment</p>
</li>
<li>
<p><strong>✂️ Pruning/Merging</strong></p>
</li>
<li>Removes nodes with low confidence and impact scores</li>
<li>Consolidates semantically similar nodes</li>
<li>
<p>Optimizes graph structure while preserving critical relationships</p>
</li>
<li>
<p><strong>🔍 Subgraph Extraction</strong></p>
</li>
<li>Identifies high-value subgraphs based on multiple criteria</li>
<li>Focuses on nodes with high confidence and impact scores</li>
<li>
<p>Extracts patterns relevant to the original query</p>
</li>
<li>
<p><strong>📝 Composition</strong></p>
</li>
<li>Synthesizes findings into coherent narrative</li>
<li>Annotates claims with node IDs and edge types</li>
<li>
<p>Provides comprehensive answers with proper citations</p>
</li>
<li>
<p><strong>🤔 Reflection</strong></p>
</li>
<li>Performs comprehensive quality audit</li>
<li>Evaluates coverage, bias detection, and methodological rigor</li>
<li>Provides final confidence assessment and improvement recommendations</li>
</ol>
<h3 id="advanced-technical-capabilities">Advanced Technical Capabilities</h3>
<div align="center">
<table>
<tr>
<td align="center">🔄 <b>Multi-Dimensional<br>Confidence</b></td>
<td align="center">🧠 <b>Graph-Based<br>Knowledge</b></td>
<td align="center">🔌 <b>MCP<br>Integration</b></td>
<td align="center">⚡ <b>FastAPI<br>Backend</b></td>
</tr>
<tr>
<td align="center">🐳 <b>Docker<br>Deployment</b></td>
<td align="center">🧩 <b>Modular<br>Design</b></td>
<td align="center">⚙️ <b>Configuration<br>Management</b></td>
<td align="center">🔒 <b>Type<br>Safety</b></td>
</tr>
<tr>
<td align="center">🌐 <b>Interdisciplinary<br>Bridge Nodes</b></td>
<td align="center">🔗 <b>Hyperedge<br>Support</b></td>
<td align="center">📊 <b>Statistical<br>Power Analysis</b></td>
<td align="center">🎯 <b>Impact<br>Estimation</b></td>
</tr>
</table>
</div>
<h3 id="architectural-highlights">Architectural Highlights</h3>
<p>Adaptive Graph of Thoughts is built around a flexible 8-stage pipeline architecture, where each stage encapsulates specific reasoning logic. This design promotes modularity and clarity.</p>
<ul>
<li><strong>8-Stage Pipeline Design</strong>: The core reasoning process is broken down into eight distinct stages, from initialization to reflection. Each stage has a well-defined responsibility.</li>
<li><strong>Stage-Specific Logic and Neo4j Interaction</strong>: Graph operations and interactions with the Neo4j database are primarily handled within individual stages. Each stage formulates and executes Cypher queries relevant to its task, utilizing <code>neo4j_utils</code> for database communication. This means the graph representation is persisted and manipulated directly within Neo4j.</li>
<li><strong>Orchestration by <code>GoTProcessor</code></strong>: The <code>GoTProcessor</code> acts as the central orchestrator. It manages the flow through the 8-stage pipeline, invoking each stage in sequence. It does not manage a central graph object in memory; rather, it facilitates the overall process.</li>
<li><strong>Data Flow Between Stages</strong>: Data is passed between stages using <code>GoTProcessorSessionData</code> and <code>accumulated_context</code>. Each stage receives context from previous stages and can contribute its findings to the <code>accumulated_context</code>, which is then available to subsequent stages. This allows for a progressive build-up of insights as the pipeline executes.</li>
</ul>
<p><strong>Core Features:</strong>
- <strong>🧠 Graph Knowledge Representation</strong>: Utilizes a <strong>Neo4j graph database</strong> to model complex relationships. Graph interactions and manipulations are performed by individual pipeline stages using Cypher queries via <code>neo4j_utils</code>.
- <strong>🔄 Dynamic Confidence Vectors</strong>: Four-dimensional confidence assessment (empirical support, theoretical basis, methodological rigor, consensus alignment)
- <strong>🌐 Interdisciplinary Bridge Nodes</strong>: Automatically connects insights across different research domains
- <strong>🔗 Advanced Edge Types</strong>: Supports causal, temporal, correlative, and custom relationship types
- <strong>📊 Statistical Rigor</strong>: Integrated power analysis and effect size estimation
- <strong>🎯 Impact-Driven Prioritization</strong>: Focuses on high-impact research directions
- <strong>🔌 MCP Server</strong>: Seamless Claude Desktop integration with Model Context Protocol
- <strong>⚡ High-Performance API</strong>: Modern FastAPI implementation with async support</p>
<h2 id="technology-stack">🛠️ Technology Stack</h2>
<div align="center">
<table>
<tr>
<td align="center"><img src="https://raw.githubusercontent.com/devicons/devicon/master/icons/python/python-original.svg" alt="Python logo" width="38" height="38"/><br>Python 3.11+</td>
<td align="center"><img src="https://fastapi.tiangolo.com/img/logo-margin/logo-teal.png" alt="FastAPI logo" width="38" height="38"/><br>FastAPI</td>
<td align="center"><img src="https://networkx.org/documentation/stable/_static/networkx_logo.svg" width="38" height="38"/><br>NetworkX</td>
<td align="center"><img src="https://raw.githubusercontent.com/devicons/devicon/master/icons/docker/docker-original.svg" width="38" height="38"/><br>Docker</td>
</tr>
<tr>
<td align="center"><img src="https://docs.pytest.org/en/7.3.x/_static/pytest_logo_curves.svg" width="38" height="38"/><br>Pytest</td>
<td align="center"><img src="https://docs.pydantic.dev/latest/img/logo-white.svg" width="38" height="38"/><br>Pydantic</td>
<td align="center"><img src="https://python-poetry.org/images/logo-origami.svg" width="38" height="38"/><br>Poetry</td>
<td align="center"><img src="https://raw.githubusercontent.com/tomchristie/uvicorn/master/docs/uvicorn.png" width="38" height="38"/><br>Uvicorn</td>
</tr>
</table>
</div>
<p><em>For detailed setup, usage, and contribution guidelines, please refer to the respective sections in this documentation.</em></p>
</article>
</div>
<script>var tabs=__md_get("__tabs");if(Array.isArray(tabs))e:for(var set of document.querySelectorAll(".tabbed-set")){var labels=set.querySelector(".tabbed-labels");for(var tab of tabs)for(var label of labels.getElementsByTagName("label"))if(label.innerText.trim()===tab){var input=document.getElementById(label.htmlFor);input.checked=!0;continue e}}</script>
<script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
</div>
<button type="button" class="md-top md-icon" data-md-component="top" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8z"/></svg>
Back to top
</button>
</main>
<footer class="md-footer">
<div class="md-footer-meta md-typeset">
<div class="md-footer-meta__inner md-grid">
<div class="md-copyright">
Made with
<a href="https://squidfunk.github.io/mkdocs-material/" target="_blank" rel="noopener">
Material for MkDocs
</a>
</div>
</div>
</div>
</footer>
</div>
<div class="md-dialog" data-md-component="dialog">
<div class="md-dialog__inner md-typeset"></div>
</div>
<script id="__config" type="application/json">{"base": ".", "features": ["navigation.tabs", "navigation.sections", "toc.integrate", "navigation.top", "search.suggest", "search.highlight", "content.tabs.link", "content.code.annotation", "content.code.copy", "navigation.indexes", "navigation.expand", "header.autohide"], "search": "assets/javascripts/workers/search.d50fe291.min.js", "tags": null, "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": null}</script>
<script src="assets/javascripts/bundle.13a4f30d.min.js"></script>
<script src="https://unpkg.com/mermaid@10.4.0/dist/mermaid.min.js"></script>
</body>
</html>