Zen MCP Server

Zen MCP: One Context. Many Minds.

https://github.com/user-attachments/assets/8097e18e-b926-4d8b-ba14-a979e4c58bda

The ultimate development partners for Claude - a Model Context Protocol server that gives Claude access to multiple AI models for enhanced code analysis, problem-solving, and collaborative development.

Features true AI orchestration with conversations that continue across tasks - Give Claude a complex task and let it orchestrate between models automatically. Claude stays in control, performs the actual work, but gets perspectives from the best AI for each subtask. Claude can switch between different tools and models mid-conversation, with context carrying forward seamlessly.

Example Workflow - Claude Code:

1. Performs its own reasoning
2. Uses Gemini Pro to deeply analyze the code in question for a second opinion
3. Switches to O3 to continue chatting about its findings
4. Uses Flash to evaluate formatting suggestions from O3
5. Performs the actual work after taking in feedback from all three
6. Returns to Pro for a precommit review

All within a single conversation thread! Gemini Pro in step 6 knows what was recommended by O3 in step 3! Taking that context and review into consideration to aid with its pre-commit review.

Think of it as Claude Code for Claude Code. This MCP isn't magic. It's just super-glue.

Quick Navigation

• Getting Started
  • Quickstart - Get running in 5 minutes with Docker
  • Available Tools - Overview of all tools
  • AI-to-AI Conversations - Multi-turn conversations
• Tools Reference
  • chat - Collaborative thinking
  • thinkdeep - Extended reasoning
  • codereview - Code review
  • precommit - Pre-commit validation
  • debug - Debugging help
  • analyze - File analysis
• Advanced Usage
  • Advanced Features - AI-to-AI conversations, large prompts, web search
  • Complete Advanced Guide - Model configuration, thinking modes, workflows, tool parameters
• Setup & Support
  • Troubleshooting Guide - Common issues and debugging steps
  • License - Apache 2.0

Why This Server?

Claude is brilliant, but sometimes you need:

• Multiple AI perspectives - Let Claude orchestrate between different models to get the best analysis
• Automatic model selection - Claude picks the right model for each task (or you can specify)
• A senior developer partner to validate and extend ideas (chat)
• A second opinion on complex architectural decisions - augment Claude's thinking with perspectives from Gemini Pro, O3, or dozens of other models via custom endpoints (thinkdeep)
• Professional code reviews with actionable feedback across entire repositories (codereview)
• Pre-commit validation with deep analysis using the best model for the job (precommit)
• Expert debugging - O3 for logical issues, Gemini for architectural problems (debug)
• Extended context windows beyond Claude's limits - Delegate analysis to Gemini (1M tokens) or O3 (200K tokens) for entire codebases, large datasets, or comprehensive documentation
• Model-specific strengths - Extended thinking with Gemini Pro, fast iteration with Flash, strong reasoning with O3, local privacy with Ollama
• Local model support - Run models like Llama 3.2 locally via Ollama, vLLM, or LM Studio for privacy and cost control
• Dynamic collaboration - Models can request additional context and follow-up replies from Claude mid-analysis
• Smart file handling - Automatically expands directories, manages token limits based on model capacity
• Bypass MCP's token limits - Work around MCP's 25K limit automatically

This server orchestrates multiple AI models as your development team, with Claude automatically selecting the best model for each task or allowing you to choose specific models for different strengths.

Prompt Used:

The final implementation resulted in a 26% improvement in JSON parsing performance for the selected library, reducing processing time through targeted, collaborative optimizations guided by Gemini’s analysis and Claude’s refinement.

Quickstart (5 minutes)

Prerequisites

• Docker Desktop installed (Download here)
• Git
• Windows users: WSL2 is required for Claude Code CLI

1. Get API Keys (at least one required)

Option A: OpenRouter (Access multiple models with one API)

• OpenRouter: Visit OpenRouter for access to multiple models through one API. Setup Guide
  • Control model access and spending limits directly in your OpenRouter dashboard
  • Configure model aliases in conf/custom_models.json

Option B: Native APIs

• Gemini: Visit Google AI Studio and generate an API key. For best results with Gemini 2.5 Pro, use a paid API key as the free tier has limited access to the latest models.
• OpenAI: Visit OpenAI Platform to get an API key for O3 model access.

Option C: Custom API Endpoints (Local models like Ollama, vLLM) Please see the setup guide. With a custom API you can use:

• Ollama: Run models like Llama 3.2 locally for free inference
• vLLM: Self-hosted inference server for high-throughput inference
• LM Studio: Local model hosting with OpenAI-compatible API interface
• Text Generation WebUI: Popular local interface for running models
• Any OpenAI-compatible API: Custom endpoints for your own infrastructure

Note: Using all three options may create ambiguity about which provider / model to use if there is an overlap. If all APIs are configured, native APIs will take priority when there is a clash in model name, such as for gemini and o3. Configure your model aliases and give them unique names in conf/custom_models.json

2. Clone and Set Up

What this does:

• Builds Docker images with all dependencies (including Redis for conversation threading)
• Creates .env file (automatically uses $GEMINI_API_KEY and $OPENAI_API_KEY if set in environment)
• Starts Redis service for AI-to-AI conversation memory
• Starts MCP server with providers based on available API keys
• Adds Zen to Claude Code automatically

3. Add Your API Keys

4. Configure Claude

If Setting up for Claude Code

Run the following commands on the terminal to add the MCP directly to Claude Code

Now run claude on the terminal for it to connect to the newly added mcp server. If you were already running a claude code session, please exit and start a new session.

If Setting up for Claude Desktop

• Open Claude Desktop
• Go to Settings → Developer → Edit Config

This will open a folder revealing claude_desktop_config.json.

2. ** Update Docker Configuration**

The setup script shows you the exact configuration. It looks like this. When you ran setup-docker.sh it should have produced a configuration for you to copy:

Paste the above into claude_desktop_config.json. If you have several other MCP servers listed, simply add this below the rest after a , comma:

3. Restart Claude Desktop Completely quit and restart Claude Desktop for the changes to take effect.

5. Start Using It!

Just ask Claude naturally:

• "Think deeper about this architecture design with zen" → Claude picks best model + thinkdeep
• "Using zen perform a code review of this code for security issues" → Claude might pick Gemini Pro + codereview
• "Use zen and debug why this test is failing, the bug might be in my_class.swift" → Claude might pick O3 + debug
• "With zen, analyze these files to understand the data flow" → Claude picks appropriate model + analyze
• "Use flash to suggest how to format this code based on the specs mentioned in policy.md" → Uses Gemini Flash specifically
• "Think deeply about this and get o3 to debug this logic error I found in the checkOrders() function" → Uses O3 specifically
• "Brainstorm scaling strategies with pro. Study the code, pick your preferred strategy and debate with pro to settle on two best approaches" → Uses Gemini Pro specifically
• "Use local-llama to localize and add missing translations to this project" → Uses local Llama 3.2 via custom URL
• "First use local-llama for a quick local analysis, then use opus for a thorough security review" → Uses both providers in sequence

Remember: Claude remains in control — but you are the true orchestrator.
You're the prompter, the guide, the puppeteer.
Your prompt decides when Claude brings in Gemini, Flash, O3 — or handles it solo.

Available Tools

Quick Tool Selection Guide:

• Need a thinking partner? → chat (brainstorm ideas, get second opinions, validate approaches)
• Need deeper thinking? → thinkdeep (extends analysis, finds edge cases)
• Code needs review? → codereview (bugs, security, performance issues)
• Pre-commit validation? → precommit (validate git changes before committing)
• Something's broken? → debug (root cause analysis, error tracing)
• Want to understand code? → analyze (architecture, patterns, dependencies)
• Server info? → get_version (version and configuration details)

Auto Mode: When DEFAULT_MODEL=auto, Claude automatically picks the best model for each task. You can override with: "Use flash for quick analysis" or "Use o3 to debug this".

Model Selection Examples:

• Complex architecture review → Claude picks Gemini Pro
• Quick formatting check → Claude picks Flash
• Logical debugging → Claude picks O3
• General explanations → Claude picks Flash for speed
• Local analysis → Claude picks your Ollama model

Pro Tip: Thinking modes (for Gemini models) control depth vs token cost. Use "minimal" or "low" for quick tasks, "high" or "max" for complex problems. Learn more

Tools Overview:

1. chat - Collaborative thinking and development conversations
2. thinkdeep - Extended reasoning and problem-solving
3. codereview - Professional code review with severity levels
4. precommit - Validate git changes before committing
5. debug - Root cause analysis and debugging
6. analyze - General-purpose file and code analysis
7. get_version - Get server version and configuration

1. chat - General Development Chat & Collaborative Thinking

Your thinking partner - bounce ideas, get second opinions, brainstorm collaboratively

Thinking Mode: Default is medium (8,192 tokens). Use low for quick questions to save tokens, or high for complex discussions when thoroughness matters.

Example Prompt:

Key Features:

• Collaborative thinking partner for your analysis and planning
• Get second opinions on your designs and approaches
• Brainstorm solutions and explore alternatives together
• Validate your checklists and implementation plans
• General development questions and explanations
• Technology comparisons and best practices
• Architecture and design discussions
• Can reference files for context: "Use gemini to explain this algorithm with context from algorithm.py"
• Dynamic collaboration: Gemini can request additional files or context during the conversation if needed for a more thorough response
• Web search capability: Analyzes when web searches would be helpful and recommends specific searches for Claude to perform, ensuring access to current documentation and best practices

2. thinkdeep - Extended Reasoning Partner

Get a second opinion to augment Claude's own extended thinking

Thinking Mode: Default is high (16,384 tokens) for deep analysis. Claude will automatically choose the best mode based on complexity - use low for quick validations, medium for standard problems, high for complex issues (default), or max for extremely complex challenges requiring deepest analysis.

Example Prompt:

Key Features:

• Uses Gemini's specialized thinking models for enhanced reasoning capabilities
• Provides a second opinion on Claude's analysis
• Challenges assumptions and identifies edge cases Claude might miss
• Offers alternative perspectives and approaches
• Validates architectural decisions and design patterns
• Can reference specific files for context: "Use gemini to think deeper about my API design with reference to api/routes.py"
• Enhanced Critical Evaluation (v2.10.0): After Gemini's analysis, Claude is prompted to critically evaluate the suggestions, consider context and constraints, identify risks, and synthesize a final recommendation - ensuring a balanced, well-considered solution
• Web search capability: When enabled (default: true), identifies areas where current documentation or community solutions would strengthen the analysis and suggests specific searches for Claude

3. codereview - Professional Code Review

Comprehensive code analysis with prioritized feedback

Thinking Mode: Default is medium (8,192 tokens). Use high for security-critical code (worth the extra tokens) or low for quick style checks (saves ~6k tokens).

Example Prompts:

Key Features:

• Issues prioritized by severity (🔴 CRITICAL → 🟢 LOW)
• Supports specialized reviews: security, performance, quick
• Can enforce coding standards: "Use gemini to review src/ against PEP8 standards"
• Filters by severity: "Get gemini to review auth/ - only report critical vulnerabilities"

4. precommit - Pre-Commit Validation

Comprehensive review of staged/unstaged git changes across multiple repositories

Thinking Mode: Default is medium (8,192 tokens). Use high or max for critical releases when thorough validation justifies the token cost.

Prompt Used:

How beautiful is that? Claude used precommit twice and codereview once and actually found and fixed two critical errors before commit!

Example Prompts:

Key Features:

• Recursive repository discovery - finds all git repos including nested ones
• Validates changes against requirements - ensures implementation matches intent
• Detects incomplete changes - finds added functions never called, missing tests, etc.
• Multi-repo support - reviews changes across multiple repositories in one go
• Configurable scope - review staged, unstaged, or compare against branches
• Security focused - catches exposed secrets, vulnerabilities in new code
• Smart truncation - handles large diffs without exceeding context limits

Parameters:

• path: Starting directory to search for repos (default: current directory)
• original_request: The requirements for context
• compare_to: Compare against a branch/tag instead of local changes
• review_type: full|security|performance|quick
• severity_filter: Filter by issue severity
• max_depth: How deep to search for nested repos

5. debug - Expert Debugging Assistant

Root cause analysis for complex problems

Thinking Mode: Default is medium (8,192 tokens). Use high for tricky bugs (investment in finding root cause) or low for simple errors (save tokens).

Example Prompts:

Basic Usage:

Key Features:

• Generates multiple ranked hypotheses for systematic debugging
• Accepts error context, stack traces, and logs
• Can reference relevant files for investigation
• Supports runtime info and previous attempts
• Provides structured root cause analysis with validation steps
• Can request additional context when needed for thorough analysis
• Web search capability: When enabled (default: true), identifies when searching for error messages, known issues, or documentation would help solve the problem and recommends specific searches for Claude

6. analyze - Smart File Analysis

General-purpose code understanding and exploration

Thinking Mode: Default is medium (8,192 tokens). Use high for architecture analysis (comprehensive insights worth the cost) or low for quick file overviews (save ~6k tokens).

Example Prompts:

Basic Usage:

Key Features:

• Analyzes single files or entire directories
• Supports specialized analysis types: architecture, performance, security, quality
• Uses file paths (not content) for clean terminal output
• Can identify patterns, anti-patterns, and refactoring opportunities
• Web search capability: When enabled with use_websearch (default: true), the model can request Claude to perform web searches and share results back to enhance analysis with current documentation, design patterns, and best practices

7. get_version - Server Information

For detailed tool parameters and configuration options, see the Advanced Usage Guide.

Advanced Features

AI-to-AI Conversation Threading

This server enables true AI collaboration between Claude and multiple AI models (Gemini, O3), where they can coordinate and question each other's approaches:

How it works:

• Gemini can ask Claude follow-up questions to clarify requirements or gather more context
• Claude can respond with additional information, files, or refined instructions
• Claude can work independently between exchanges - implementing solutions, gathering data, or performing analysis
• Claude can return to Gemini with progress updates and new context for further collaboration
• Cross-tool continuation - Start with one tool (e.g., analyze) and continue with another (e.g., codereview) using the same conversation thread
• Both AIs coordinate their approaches - questioning assumptions, validating solutions, and building on each other's insights
• Each conversation maintains full context while only sending incremental updates
• Conversations are automatically managed with Redis for persistence

Example of Multi-Model AI Coordination:

1. You: "Debate SwiftUI vs UIKit - which is better for iOS development?"
2. Claude (auto mode): "I'll orchestrate a debate between different models for diverse perspectives."
3. Gemini Pro: "From an architectural standpoint, SwiftUI's declarative paradigm and state management make it superior for maintainable, modern apps."
4. O3: "Logically analyzing the trade-offs: UIKit offers 15+ years of stability, complete control, and proven scalability. SwiftUI has <5 years maturity with ongoing breaking changes."
5. Claude: "Let me get Flash's quick take on developer experience..."
6. Gemini Flash: "SwiftUI = faster development, less code, better previews. UIKit = more control, better debugging, stable APIs."
7. Claude's synthesis: "Based on the multi-model analysis: Use SwiftUI for new projects prioritizing development speed, UIKit for apps requiring fine control or supporting older iOS versions."

Asynchronous workflow example:

• Claude can work independently between exchanges (analyzing code, implementing fixes, gathering data)
• Return to Gemini with progress updates and additional context
• Each exchange shares only incremental information while maintaining full conversation history
• Automatically bypasses MCP's 25K token limits through incremental updates

Enhanced collaboration features:

• Cross-questioning: AIs can challenge each other's assumptions and approaches
• Coordinated problem-solving: Each AI contributes their strengths to complex problems
• Context building: Claude gathers information while Gemini provides deep analysis
• Approach validation: AIs can verify and improve each other's solutions
• Cross-tool continuation: Seamlessly continue conversations across different tools while preserving all context
• Asynchronous workflow: Conversations don't need to be sequential - Claude can work on tasks between exchanges, then return to Gemini with additional context and progress updates
• Incremental updates: Share only new information in each exchange while maintaining full conversation history
• Automatic 25K limit bypass: Each exchange sends only incremental context, allowing unlimited total conversation size
• Up to 5 exchanges per conversation with 1-hour expiry
• Thread-safe with Redis persistence across all tools

Cross-tool & Cross-Model Continuation Example:

For more advanced features like working with large prompts and dynamic context requests, see the Advanced Usage Guide.

Configuration

Auto Mode (Recommended): Set DEFAULT_MODEL=auto in your .env file and Claude will intelligently select the best model for each task.

Available Models:

• pro (Gemini 2.5 Pro): Extended thinking, deep analysis
• flash (Gemini 2.0 Flash): Ultra-fast responses
• o3: Strong logical reasoning
• o3-mini: Balanced speed/quality
• Custom models: via OpenRouter or local APIs (Ollama, vLLM, etc.)

For detailed configuration options, see the Advanced Usage Guide.

License

Apache 2.0 License - see LICENSE file for details.

Acknowledgments

Built with the power of Multi-Model AI collaboration 🤝

• MCP (Model Context Protocol) by Anthropic
• Claude Code - Your AI coding assistant & orchestrator
• Gemini 2.5 Pro & 2.0 Flash - Extended thinking & fast analysis
• OpenAI O3 - Strong reasoning & general intelligence