Skip to main content
Glama

PDB MCP Server

search_structures

Retrieve protein structures from the PDB database using keywords, protein names, or PDB IDs. Filter and sort results by experimental method, resolution range, or release date. Ideal for targeted biological research.

Instructions

Search PDB database for protein structures by keyword, protein name, or PDB ID

Input Schema

NameRequiredDescriptionDefault
experimental_methodNoFilter by experimental method (X-RAY, NMR, ELECTRON MICROSCOPY)
limitNoNumber of results to return (1-1000, default: 25)
queryYesSearch query (protein name, keyword, PDB ID, etc.)
resolution_rangeNoResolution range filter (e.g., "1.0-2.0")
sort_byNoSort results by (release_date, resolution, etc.)

Input Schema (JSON Schema)

{ "properties": { "experimental_method": { "description": "Filter by experimental method (X-RAY, NMR, ELECTRON MICROSCOPY)", "type": "string" }, "limit": { "description": "Number of results to return (1-1000, default: 25)", "maximum": 1000, "minimum": 1, "type": "number" }, "query": { "description": "Search query (protein name, keyword, PDB ID, etc.)", "type": "string" }, "resolution_range": { "description": "Resolution range filter (e.g., \"1.0-2.0\")", "type": "string" }, "sort_by": { "description": "Sort results by (release_date, resolution, etc.)", "type": "string" } }, "required": [ "query" ], "type": "object" }

Other Tools from PDB MCP Server

Related Tools

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/Augmented-Nature/PDB-MCP-Server'

If you have feedback or need assistance with the MCP directory API, please join our Discord server