PDB MCP Server

MIT License

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download_structure

Retrieve protein structure coordinates in PDB, mmCIF, MMTF, or XML formats by specifying the PDB ID and optional biological assembly ID.

Instructions

Download structure coordinates in various formats

Input Schema

Name	Required	Description
`assembly_id`	No	Biological assembly ID (optional)
`format`	No	File format (default: pdb)
`pdb_id`	Yes	PDB ID (4-character code)

Input Schema (JSON Schema)

{
  "properties": {
    "assembly_id": {
      "description": "Biological assembly ID (optional)",
      "type": "string"
    },
    "format": {
      "description": "File format (default: pdb)",
      "enum": [
        "pdb",
        "mmcif",
        "mmtf",
        "xml"
      ],
      "type": "string"
    },
    "pdb_id": {
      "description": "PDB ID (4-character code)",
      "type": "string"
    }
  },
  "required": [
    "pdb_id"
  ],
  "type": "object"
}

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