"How to query a MySQL database" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.
Read-only MCP connector for The Dose Guy source-linked peptide and compound database. Search 260+ compounds, compare vendors and prices, inspect ranking evidence, and retrieve canonical page links. No authentication required.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
InterPro MCP (EBI) — protein family / domain / functional-site classification.
Find open biology and chemistry AI models, bioinformatics tools and databases, and run them online.
A molecular biology bench for AI assistants: cloning and assembly, PCR and primer design, CRISPR, Sanger verification, qPCR and dPCR, alignment and phylogenetics, genomics, proteins and cheminformatics. Calculated by engines checked against the field's reference tools, with every result explained. No auth, stateless, free.
Agent research API for 15 disease areas, plus a T1D cure lab, sourced evidence ledger and models.
BioBricks: the site's own MCP server — dataset, enquiry (enquiry = a human handoff, not a...
HLA nomenclature and match checks against a pinned IPD-IMGT/HLA release. No patient identifiers.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
IntAct (EBI) molecular-interaction database MCP. Keyless.
MetaboLights MCP — EBI's metabolomics study repository.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).
