"How to query a MySQL database" matching MCP connectors:
Matching Connector Tools:
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
RCSB PDB MCP — experimentally determined macromolecular structures.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
UniProt MCP — protein sequence + function database.
Bioregistry — meta-registry of biomedical identifier prefixes
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
WikiPathways MCP — open community pathway database.
MetaboLights MCP — EBI's metabolomics study repository.