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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
PubTator 3 MCP — biomedical entity search, literature search with entity
PDBe (Protein Data Bank in Europe, EBI) MCP.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCI CACTUS Chemical Identifier Resolver MCP.
SGD (Saccharomyces Genome Database) MCP.
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
InterPro MCP (EBI) — protein family / domain / functional-site classification.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…
CIViC — Clinical Interpretation of Variants in Cancer.
Rhea MCP — expert-curated database of biochemical reactions.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.