"Best practices for organizing and structuring a codebase" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.
ACMG/AMP germline variant classification, gene profiles, disease associations and literature.
Run protein folding, docking, design and sequence analysis tools, and read their results.
Read-only MCP connector for The Dose Guy source-linked peptide and compound database. Search 260+ compounds, compare vendors and prices, inspect ranking evidence, and retrieve canonical page links. No authentication required.
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, with ClinVar.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Resolve WoRMS marine species names; fetch classifications, synonyms, distributions, traits, and IDs.
Biomedical data: compounds, drug info, and molecular targets
Search InterPro entries, map domains onto proteins and PDB structures, and scan raw sequences.
Find pharmacogenomics guidelines, translate diplotypes, and retrieve prescribing recommendations.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
Agent research API for 15 disease areas, plus a T1D cure lab, sourced evidence ledger and models.
Annotate and classify human genetic variants with GeneBe (ACMG, gnomAD, ClinVar). Research use only.
Find open biology and chemistry AI models, bioinformatics tools and databases, and run them online.
A molecular biology bench for AI assistants: cloning and assembly, PCR and primer design, CRISPR, Sanger verification, qPCR and dPCR, alignment and phylogenetics, genomics, proteins and cheminformatics. Calculated by engines checked against the field's reference tools, with every result explained. No auth, stateless, free.
Cancer gene co-occurrence and exclusivity in tumour cohorts, with confound controls and exact tests.
BioBricks: the site's own MCP server — dataset, enquiry (enquiry = a human handoff, not a...
HLA nomenclature and match checks against a pinned IPD-IMGT/HLA release. No patient identifiers.
PK serum simulation, reconstitution math and compound data for agents. Paid tools $0.01 via x402.
Deterministic peptide reconstitution and dosing math, so assistants compute it instead of guessing.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Biotech rNPV/PoS engine for AI agents. Signed exports, evidence register, asset landscape.
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
