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Glama

Metabolights

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observed

TDQS

A4.9/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses embedding model, window size, character limit with truncation flag, and return fields (offsets, scores). Adds value beyond annotations which only state readOnly, idempotent, not destructive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with main purpose, each sentence adds critical info without fluff. Highly efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite no output schema, description fully explains return values (offsets, scores) and input constraints (200K chars, truncation). Pairs well with sibling and covers all agent needs.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% but description adds real-world examples (e.g., 'supply-chain risk'), default value for limit, and context that text is 'already pulled'. Enhances understanding.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states 'semantic search INSIDE a fetched record' with verb and resource, and distinguishes from siblings like ask_pipeworx_grounded. Specific use case given.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says when to use: 'when the record is too big to cram into the prompt'. Also suggests pairing with ask_pipeworx_grounded and explains benefits.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

B3.3/5.0
Disambiguation1/5

The vast majority of tools (e.g., ask_pipeworx, ask_pipeworx_grounded, bet_research, polymarket_arbitrage, etc.) are unrelated to Metabolights and overlap heavily with each other in purpose. Only two tools (get_study and search_studies) are clearly distinct and relevant to the server's stated domain.

Naming Consistency2/5

Tool names are highly inconsistent, mixing snake_case (get_study, search_studies), camelCase (ask_pipeworx), and varied verb styles (e.g., validate_claim vs bet_research). No consistent pattern across the set.

Tool Count1/5

With 28 tools, the server is extremely overpopulated for its stated purpose (Metabolights). Only 2 tools actually pertain to metabolomics study access, while the remaining 26 are general-purpose or unrelated (e.g., bet_research, polymarket_edges), making the count highly inappropriate.

Completeness1/5

The Metabolights domain severely lacks completeness: only search_studies and get_study are provided, with no create, update, delete, or upload functionality. The server fails to cover essential operations for its supposed domain.

Resources