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Cbioportal

by io.github.pipeworx-io

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Idempotent

Create a proactive monitoring subscription to a live-data event stream. Returns the new subscription id. Requires a Pipeworx OAuth account (anonymous + BYO cannot persist subscriptions). Supported types: "sec_8k" (8-K filings matching ticker + item codes — e.g. items:["5.02"] = officer change), "polymarket_edge" (Polymarket↔Kalshi cross-venue mispricings — params:{topic:"fed"}), "fred_series" (new FRED observations — params:{series_id:"UNRATE"}). Delivery channels: feed (always on — pull via recent_alerts or GET registry.pipeworx.io/alerts.json), and optionally email (set delivery:{email:"you@x.com"}) or sms (delivery:{sms:"+15551234567"} — phone must be verified at /account first; 10/day cap).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
typeYesSubscription type.
paramsYesType-specific filter. sec_8k: {ticker:"AAPL", items?:["5.02","1.01"]}. polymarket_edge: {topic:"fed", min_spread_bps?:500}. fred_series: {series_id:"UNRATE"}. patent_grant: {applicant:"Apple Inc."}. clinical_trial: {sponsor?:"Pfizer", condition?:"lung cancer", phase?:"PHASE3"} (sponsor or condition required).
deliveryNoOptional delivery channels in addition to the always-on persistent feed. {email:"you@x.com"} sends a templated alert per fired event. {sms:"+15551234567"} sends an SMS per event — must match the verified phone on the caller's account (verify at https://pipeworx.io/account first; 10/day cap). {webhook:"https://..."} POSTs each event JSON to your endpoint, HMAC-signed — the response includes delivery.webhook_secret (whsec_…) ONCE; verify X-Pipeworx-Signature = sha256 HMAC of "<X-Pipeworx-Timestamp>.<raw body>". Auto-disabled after 10 consecutive failing runs.

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description adds extensive behavioral context beyond annotations, including authentication requirements, type-specific parameters, delivery constraints (10/day SMS cap), webhook signing details, and auto-disable behavior. However, the idempotentHint annotation (true) is not clarified in the description, leaving ambiguity about idempotency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured and front-loaded with the core purpose. While it is relatively long, each sentence adds essential information, balancing conciseness with necessary detail.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool is complex with multiple types and delivery options, and the description covers most aspects (authentication, type examples, delivery constraints, return value). Minor gaps include lack of error handling details or idempotency clarification.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 100% schema coverage, the description adds significant value by providing concrete examples for each type, elaborating on parameter combinations, and explaining delivery channel constraints that go beyond the schema definitions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool creates a proactive monitoring subscription and returns a subscription ID. It distinguishes from sibling tools like list_subscriptions and unsubscribe by focusing on creation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides explicit prerequisites (Pipeworx OAuth account), lists supported types with examples, and details delivery channels. However, it does not directly compare to sibling tools or state when to use alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.6/5.0
Disambiguation3/5

Most tools have clearly distinct purposes, but ask_pipeworx_beta is an intentional near-duplicate of ask_pipeworx, and several polymarket/entity tools overlap in scope. The descriptions do enough to disambiguate most pairs, but the duplicate beta routing tool introduces real ambiguity.

Naming Consistency3/5

All names use snake_case, but the pattern varies: verb_noun (get_gene, search_studies), noun_noun (polymarket_edges, pipeworx_trending), and product-prefixed verbs (ask_pipeworx, bet_research). There is no single consistent convention, though the names remain readable.

Tool Count2/5

35 tools is a heavy surface, and the vast majority (31) are unrelated to cBioPortal; only four tools actually belong to the named domain. This makes the count inappropriate for a cancer-genomics MCP server, as the set is bloated with out-of-scope utilities.

Completeness1/5

For a cBioPortal server, only metadata-level tools exist (gene lookup, study details, cancer types, study search); core cBioPortal data access — mutations, copy-number alterations, clinical data, molecular profiles, sample-level queries — is entirely missing. The tool surface severely under-covers the named domain.

Resources