Skip to main content
Glama

Bioregistry

by io.github.pipeworx-io

Recent Alerts

recent_alerts
Read-onlyIdempotent

Pull fired events from your subscription feed. Returns the most recent alerts the evaluator has written to your persisted feed — each carries source, citation_uri (pipeworx:// when available), and the raw event payload. Filter by type (e.g. "sec_8k") and/or since (ISO timestamp). Set mark_read:true to flag returned events read so the next call only shows newer ones. Polls work fine; the same feed is also at GET registry.pipeworx.io/alerts.json for scripts and dashboards.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
typeNoOptional — filter to one subscription type.
limitNoMax events to return (1-200, default 50).
sinceNoOptional ISO timestamp — return events fired_at >= this time.
mark_readNoFlag the returned events read in the same call (default false).
unread_onlyNoReturn only events where read_at is null (default false).

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations mark it read-only, but the description discloses that mark_read can mutate read state—a critical behavior beyond annotations. No contradictions, but the description adds needed context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single paragraph of four sentences, front-loading key information. The alternative endpoint mention is slightly extraneous but doesn't harm conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite no output schema, the description covers return fields (source, citation_uri, payload) and filter options. It doesn't explain limit or unread_only in text, but schema covers them. Overall sufficiently complete for its complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with clear parameter descriptions. The description adds value by explaining mark_read semantics (flagging events as read), which isn't fully captured in the schema, and reinforces filter usage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool pulls fired events from a subscription feed, specifying the resource (alerts) and action (return). It distinguishes from siblings like list_subscriptions and recent_changes by focusing on alert events with filter options.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear filter usage (type, since), explains mark_read behavior, and notes polling safety. It lacks explicit when-not advice but implies alternatives via the REST endpoint mention.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

All Bioregistry toolsInspect
Try in Browser
RayrunBuild, deploy, and operate MCP servers without becoming an infrastructure team.ray.runAd

Glama MCP Gateway

Add one secure layer between your agents and this server.

TDQS

A3.5/5.0
Disambiguation2/5

Severe overlap exists between ask_pipeworx, ask_pipeworx_beta, ask_pipeworx_grounded, and deep_research, all of which route to the same 5,743-tool catalog with only subtle differences. The pair resolve (CURIE-to-URL) and resolve_entity (name-to-ID) share the same verb but mean completely different things in different domains, and the five polymarket tools have heavily overlapping purposes.

Naming Consistency2/5

The set mixes multiple conventions: noun-only names (prefix, prefixes, search, resolve), verb_noun names (generate_llms_txt, scan_dependency, validate_claim), adjective_noun names (recent_alerts, recent_changes), and vendor-prefixed names (ask_pipeworx*, pipeworx_*, polymarket_*). Some names break the pattern entirely, like forget and remember, and the plural prefix/prefixes pair is inconsistent.

Tool Count2/5

35 tools is heavy for any single server, but the bigger problem is that roughly 31 tools are Pipeworx platform utilities (asking, memory, subscriptions, feedback) while only 4 serve the stated 'Bioregistry' purpose. A server named Bioregistry carrying prediction-market arbitrage and AI-visibility tools is poorly scoped regardless of the absolute count.

Completeness2/5

The Bioregistry surface is thin: search, prefix, prefixes, and resolve cover lookup/pagination but no registry management, and the remaining tools belong to an entirely different, unrelated domain. The server's apparent purpose ('Bioregistry') is barely served, while the Pipeworx functionality, though broad, is buried under an incongruent server name, making the overall surface incomplete and incoherent.

Resources