Skip to main content
Glama

Bioregistry

by io.github.pipeworx-io

Ask Pipeworx — Grounded

ask_pipeworx_grounded
Read-onlyIdempotent

Hallucination-resistant answer mode for high-stakes reads. Same routing as ask_pipeworx — picks the right tool from 5,743 across 1500 sources, fills arguments, fetches the data — then EXTRACTS the answer using ONLY what the tool result contains. Returns {answer, evidence (verbatim quote), confidence, source, fetched_at, refusal_reason:null} on success, OR an explicit refusal {answer:null, refusal_reason:"not_in_source"|"no_tool_match"|"tool_error"|"data_truncated"|"llm_error"} when the data doesn't directly answer. Use whenever an answer will be quoted, cited, or acted on, and the agent must not invent facts (financial verdicts, legal claims, medical lookups, public statements). Costs one extra LLM call vs ask_pipeworx — prefer ask_pipeworx for casual lookups.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
qNoAlias for question.
textNoAlias for question.
inputNoAlias for question.
queryNoAlias for question.
promptNoAlias for question.
questionYesYour question in natural language. Accepts query, q, prompt, text, input as aliases.

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description goes well beyond the annotations by disclosing the refusal behavior, exact refusal reasons, the success response shape, the evidence requirement, and the extra LLM call cost. This gives the agent a clear model of what the tool will and will not do.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is dense but every clause earns its place: purpose, routing, behavior, return/refusal contract, usage context, and cost tradeoff. It is front-loaded with the core identity and structured logically from what it does to when to use it.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Even though there is no output schema, the description fully specifies both the success return fields and the refusal reason enum. Combined with annotations and the complete input schema, nothing needed to call the tool correctly or interpret its result is missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema already documents the single required parameter and all aliases at 100% coverage, so the description does not need to add parameter-level detail. It does not meaningfully expand on schema semantics but also does not need to.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description opens with a specific purpose ('Hallucination-resistant answer mode for high-stakes reads') and clearly contrasts it with ask_pipeworx, naming the exact difference: grounded extraction from tool result content. It is immediately distinguishable from siblings like ask_pipeworx and ask_pipeworx_beta.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use this tool ('whenever an answer will be quoted, cited, or acted on') and when to prefer the alternative ('prefer ask_pipeworx for casual lookups'). It also names the alternative directly, leaving no ambiguity about routing.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

All Bioregistry toolsInspect
Try in Browser
RayrunBuild, deploy, and operate MCP servers without becoming an infrastructure team.ray.runAd

Glama MCP Gateway

Add one secure layer between your agents and this server.

TDQS

A3.5/5.0
Disambiguation2/5

Severe overlap exists between ask_pipeworx, ask_pipeworx_beta, ask_pipeworx_grounded, and deep_research, all of which route to the same 5,743-tool catalog with only subtle differences. The pair resolve (CURIE-to-URL) and resolve_entity (name-to-ID) share the same verb but mean completely different things in different domains, and the five polymarket tools have heavily overlapping purposes.

Naming Consistency2/5

The set mixes multiple conventions: noun-only names (prefix, prefixes, search, resolve), verb_noun names (generate_llms_txt, scan_dependency, validate_claim), adjective_noun names (recent_alerts, recent_changes), and vendor-prefixed names (ask_pipeworx*, pipeworx_*, polymarket_*). Some names break the pattern entirely, like forget and remember, and the plural prefix/prefixes pair is inconsistent.

Tool Count2/5

35 tools is heavy for any single server, but the bigger problem is that roughly 31 tools are Pipeworx platform utilities (asking, memory, subscriptions, feedback) while only 4 serve the stated 'Bioregistry' purpose. A server named Bioregistry carrying prediction-market arbitrage and AI-visibility tools is poorly scoped regardless of the absolute count.

Completeness2/5

The Bioregistry surface is thin: search, prefix, prefixes, and resolve cover lookup/pagination but no registry management, and the remaining tools belong to an entirely different, unrelated domain. The server's apparent purpose ('Bioregistry') is barely served, while the Pipeworx functionality, though broad, is buried under an incongruent server name, making the overall surface incomplete and incoherent.

Resources