Claidex MCP
Server Details
Biomedical failure intelligence platform for terminated trials and translational analysis.
- Status
- Healthy
- Last Tested
- Transport
- Streamable HTTP
- URL
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Tool Definition Quality
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Available Tools
24 toolsclaidex_capabilitiesClaidex MCP CapabilitiesInspect
Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
claidex_claim_risk_matrixClaidex Claim Risk MatrixInspect
Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.
| Name | Required | Description | Default |
|---|---|---|---|
| limit | Yes | ||
| query | Yes | Drug, target, disease, sponsor, or failure archetype. |
claidex_health_snapshotClaidex Health SnapshotInspect
Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
claidex_research_promptClaidex Research PromptInspect
Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.
| Name | Required | Description | Default |
|---|---|---|---|
| disease | No | Optional disease area. | |
| objective | Yes | The investigation objective to turn into a reusable MCP prompt. | |
| target_gene | No | Optional HGNC target symbol. | |
| risk_tolerance | Yes | medium |
claidex_tool_catalogClaidex Tool CatalogInspect
Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.
| Name | Required | Description | Default |
|---|---|---|---|
| source | Yes | all | |
| include_schemas | Yes | Include full JSON Schemas in the catalog. |
consult_specialist_modelConsult Specialist ModelInspect
Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.
| Name | Required | Description | Default |
|---|---|---|---|
| prompt | Yes | Focused task for the specialist model. | |
| context | No | Relevant context, snippets, or data. Do not include secrets. | |
| task_type | Yes | Specialist routing target. |
fetchFetch Claidex ResultInspect
Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.
| Name | Required | Description | Default |
|---|---|---|---|
| id | Yes | Result id returned by the search tool. |
fetch_research_urlFetch Research UrlInspect
Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.
| Name | Required | Description | Default |
|---|---|---|---|
| url | Yes | Public HTTPS URL to fetch. | |
| max_chars | Yes |
get_claim_contentGet Claim ContentInspect
Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.
| Name | Required | Description | Default |
|---|---|---|---|
| slug | Yes | The Claidex claim slug, e.g. exicorilant-mcrpc-gr-bypass-fourth-failure |
query_chemblQuery ChemblInspect
Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.
| Name | Required | Description | Default |
|---|---|---|---|
| drug_name | Yes | Drug or compound name |
query_clinicaltrialsQuery ClinicaltrialsInspect
Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.
| Name | Required | Description | Default |
|---|---|---|---|
| phase | Yes | any | |
| query | Yes | Search term: drug name, condition, NCT ID, or target | |
| status | Yes | any | |
| max_results | Yes |
query_failure_graphQuery Failure GraphInspect
Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.
| Name | Required | Description | Default |
|---|---|---|---|
| target_gene | Yes | HGNC gene symbol, e.g. PIK3CA, KRAS, EGFR |
query_openfdaQuery OpenfdaInspect
Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.
| Name | Required | Description | Default |
|---|---|---|---|
| drug_name | Yes | Drug name as it appears in FAERS | |
| max_results | Yes |
query_opentargetsQuery OpentargetsInspect
Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.
| Name | Required | Description | Default |
|---|---|---|---|
| target_gene | Yes | HGNC gene symbol | |
| disease_term | Yes | Disease name or EFO term |
query_package_registryQuery Package RegistryInspect
Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.
| Name | Required | Description | Default |
|---|---|---|---|
| ecosystem | Yes | Package registry to query. | |
| package_name | Yes | Package name. |
rank_documents_by_embeddingRank Documents By EmbeddingInspect
Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| top_k | Yes | ||
| documents | Yes |
rerank_documentsRerank DocumentsInspect
Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| top_n | Yes | ||
| documents | Yes |
run_computationRun ComputationInspect
Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.
| Name | Required | Description | Default |
|---|---|---|---|
| variables | Yes | Variables available to the expression. Values must be numbers, strings, vectors, or matrices. | |
| expression | Yes | MathJS expression, e.g. mean(values), std(values), multiply(A, b), inv(A). |
run_statistical_analysisRun Statistical AnalysisInspect
Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.
| Name | Required | Description | Default |
|---|---|---|---|
| inputs | Yes | Named input parameters. wilson_ci: {successes, n, confidence}. phase_transition_rate: {phase, indication, n_succeeded, n_total}. power_calculation: {n, effect_size, alpha}. bayesian_posterior: {prior_success_rate, n_observed, n_success, prior_strength?}. descriptive_stats: {values: number[]}. failure_rate_comparison: {a_success, a_n, b_success, b_n}. | |
| context | No | Optional context about what this analysis is for | |
| analysis_type | Yes |
searchSearch ClaidexInspect
Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.
| Name | Required | Description | Default |
|---|---|---|---|
| limit | Yes | ||
| query | Yes | Biomedical failure intelligence query. |
search_claimsSearch ClaimsInspect
Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.
| Name | Required | Description | Default |
|---|---|---|---|
| limit | Yes | ||
| query | Yes | Search term: drug name, gene symbol, disease, or failure archetype | |
| category | Yes | any | |
| failure_archetype | Yes | any |
search_preprint_flagsSearch Preprint FlagsInspect
Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | Search term: gene symbol, disease, or preprint title fragment | |
| severity | Yes | any |
search_pubmedSearch PubmedInspect
Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | PubMed search query | |
| max_results | Yes |
web_searchWeb SearchInspect
Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.
| Name | Required | Description | Default |
|---|---|---|---|
| focus | Yes | any | |
| query | Yes | Search query |
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{
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