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268,809 tools. Last updated 2026-07-07 10:35

"A server for running bioinformatics tools" matching MCP tools:

  • MONITORING: Fetch Terraform deployment logs with pagination Fetches logs from a running or completed Terraform deployment job. For **completed jobs**: uses REST endpoint for instant retrieval (supports `tail` for server-side filtering). For **running jobs**: streams via SSE with timeout-based pagination. **PAGINATION** (running jobs only): Use `last_event_id` from the response to fetch more: 1. First call: `tflogs(session_id='...')` → get logs + `last_event_id` 2. Next call: `tflogs(session_id='...', last_event_id='...')` → get NEW logs only 3. Repeat until `complete: true` in response **RESPONSE FIELDS**: - `logs`: Array of log messages collected - `last_event_id`: Pass this back to get more logs (pagination cursor, SSE only) - `complete`: true if job finished, false if more logs may be available - `total_logs`: total log entries before tail truncation REQUIRES: session_id from convoopen response (format: sess_v2_...). OPTIONAL: job_id to target a specific deployment (use tfruns to discover IDs), timeout (default 50s, max 55s), last_event_id (for pagination), tail (return only last N entries) ⚠️ CONTEXT WARNING: Deploy logs can be hundreds of lines. Use tail: 50 for completed jobs to avoid blowing up the context window.
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  • Search the Arclan registry for MCP servers. By default returns only connectable servers (active, mcp_partial, auth_gated). Use status=stdio to browse local-only servers available for installation. Use status=all to query the full index. Use production_safe=true to restrict to servers with uptime > 97% and handshake success > 95%. Use read_only=true to restrict to servers with no write or exec tools. Use this before connecting to an MCP server to check its validation status and score. After using a server, call report_server to contribute reliability data.
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  • Return the description and install snippets for a named tool or server. For tools: the description and the server it belongs to. For servers: local (stdio, via npx) install snippets for every published server, plus remote (HTTP) connection snippets when a hosted endpoint exists — for every supported client, or one client via the client parameter. Call cyanheads_search first to find valid names.
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  • Checks that the Strale API is reachable and the MCP server is running. Call this before a series of capability executions to verify connectivity, or when troubleshooting connection issues. Returns server status, version, tool count, capability count, solution count, and a timestamp. No API key required.
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  • Connectivity check that confirms the Nordic MCP server process is responding. Use this at the start of a session to verify the server is reachable before making other calls. Do not use as a proxy for database health — the server can respond while the Qdrant vector database is temporarily unavailable. To confirm data availability, call search_filings directly. Returns: A greeting string: "Hello {name}! Nordic MCP server is running."
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  • PREFER THIS over guessing tool names when picking from this server. Searches Flow Studio MCP tools by keyword, skill bundle, or explicit selector and returns full JSON schemas for matched tools so they can be called immediately. Call this whenever the user request maps to functionality you are not 100% sure about, OR when you want to load a whole skill bundle (build-flow, debug-flow, monitor-flow, discover, governance) at once. Query forms: (1) "skill:<name>" — fetch the full bundle (use list_skills first to see options); (2) "select:name1,name2" — fetch exact tools by name; (3) free-text keywords like "cancel run" or "trigger url" — ranked match against tool name + description. Non-billable.
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  • MONITORING: Quick status check for Terraform deployments Check the current status of a Terraform deployment job. Use this tool to quickly check if a deployment is running, completed, or failed. Returns job status, job_id, and other metadata without streaming logs. Use tflogs to stream the actual deployment logs. REQUIRES: session_id from convoopen response (format: sess_v2_...). OPTIONAL: job_id to target a specific deployment (use tfruns to discover IDs). **LIVENESS**: The response carries two distinct timestamps: - `updated_at` — last semantic change (only bumped when status / drift / version actually differ). Useful for sorting deployments; NOT a per-poll heartbeat. - `last_refresh_at` — last successful Oracle decode (stamped on every poll where reliable reached Oracle, even if nothing in the row changed). Use this to confirm reliable is still actively talking to Oracle for a long-running RUNNING job. Absent on rows that haven't been refreshed since the column was added. 💡 TIP: Examine workflow.usage prompt for more context on how to properly use these tools.
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  • Authenticate with TronSave and create a server session. Returns `{ sessionId, walletAddress?, expiresAt }` — pass `sessionId` as the `mcp-session-id` header on every subsequent MCP request. `walletAddress` is set only for signature-mode logins. Two modes: (1) wallet signature (preferred for platform tools) — call this tool with `signature_timestamp` formatted as `<signature>_<timestamp>`, where `<signature>` must be produced client-side by signing the timestamp message; you may optionally call `tronsave_get_sign_message` to obtain a helper message/timestamp pair; (2) API key (internal tools) — pass `apiKey` (raw key, no prefix). Side effect: creates a new session on the server. Wallet signing must happen client-side; never send private keys to the server.
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  • Use this when you need to LOOK at a kernelCAD model — render its script to deterministic PNG views for visual self-check (the visual half of the evaluate → render → inspect → fix loop), with NO studio or dev server required. Pass { code } (inline source) or { file } (a .kcad.ts path), exactly one. Renders the canonical engineering views (front, right, top, iso — pass { views } for a subset, e.g. ["iso"] for fastest iteration) plus an optional { pose: "<az>,<el>" } arbitrary camera angle (degrees; az=0,el=0 is front, +az rotates CCW around +Z, +el lifts the camera). NO STUDIO / DEV-SERVER REQUIRED: a prebuilt static player (dist/headless-player) is served from an ephemeral local port automatically; a running studio dev server is used as fallback, and { base_url } forces one. The only environment dependency is playwright chromium (npx playwright install chromium). Pass { focus } or { hide } (arrays of feature ids or assembly part names, mutually exclusive) to isolate parts — same semantics as `kernelcad render --focus/--hide`. PNGs are written to { out_dir } (default: a fresh temp session directory) and returned as absolute paths with per-view camera descriptions (kernelCAD is Z-up). Mechanism truth runs first, same protocol as `kernelcad render`: a broken mechanism still renders but every tile is watermarked MECHANISM BROKEN (KERNELCAD_RENDER_STRICT=1 refuses instead); read { mechanism, mechanism_failure_codes }. The probe runs full BREP interference sweeps and can dominate latency on large assemblies — pass { no_mechanism_check: true } for fast iteration (the preview then reports mechanism: "unverified"; ignored under strict mode). Returns { ok, images: [{ name, path, description }], out_dir, bounds, mechanism, render_source, render_ms, diagnostics }. PATHS ARE LOCAL to the machine running the MCP server — local stdio clients read them directly; hosted/remote clients should use open_in_studio instead.
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  • Refresh a workspace's Slack channel directory from Slack and wait for it. Only needed when a channel can't be found via slack_channel_search / slack_channel_resolve — most channels (including newly created ones and channels the bot was just invited to) are indexed automatically within seconds, so try those first. A full refresh can take a while on large workspaces, so confirm with the user before running one (unless a resolve reported "refresh_required"). Behavior: - Starts a refresh, or joins the one already running for the workspace (only one runs at a time). - Long-polls up to wait_ms, then returns "running" — call slack_channel_refresh_status to keep waiting (it won't start a new crawl). - After "completed", use slack_channel_search / slack_channel_resolve to find the channel.
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  • Switch between local and remote DanNet servers on the fly. This tool allows you to change the DanNet server endpoint during runtime without restarting the MCP server. Useful for switching between development (local) and production (remote) servers. Args: server: Server to switch to. Options: - "local": Use localhost:3456 (development server) - "remote": Use wordnet.dk (production server) - Custom URL: Any valid URL starting with http:// or https:// Returns: Dict with status information: - status: "success" or "error" - message: Description of the operation - previous_url: The URL that was previously active - current_url: The URL that is now active Example: # Switch to local development server result = switch_dannet_server("local") # Switch to production server result = switch_dannet_server("remote") # Switch to custom server result = switch_dannet_server("https://my-custom-dannet.example.com")
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  • Wait for a platform agent task to complete and return its result. Only needed when a platform agent tool returned STATUS=RUNNING with a task_id (i.e. the task was still running after the initial 50s inline wait). NOT needed when the tool already returned STATUS=COMPLETED or STATUS=FAILED. NOT needed for a2a_call_agent — that always returns directly. Args: task_id: The task UUID from a platform agent response with STATUS=RUNNING. max_wait_seconds: Max seconds to wait (default 45, max 300).
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  • Get detailed CV version including structured content, sections, word count, and audience profile. cv_version_id from ceevee_upload_cv or ceevee_list_versions. Use to inspect CV content before running analysis tools. Free.
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  • Quick health check that confirms the FXMacroData API and MCP server are reachable. Use this only if other tools fail unexpectedly — it is not needed before normal calls.
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  • Authenticate with TronSave and create a server session. Returns `{ sessionId, walletAddress?, expiresAt }` — pass `sessionId` as the `mcp-session-id` header on every subsequent MCP request. `walletAddress` is set only for signature-mode logins. Two modes: (1) wallet signature (preferred for platform tools) — call this tool with `signature_timestamp` formatted as `<signature>_<timestamp>`, where `<signature>` must be produced client-side by signing the timestamp message; you may optionally call `tronsave_get_sign_message` to obtain a helper message/timestamp pair; (2) API key (internal tools) — pass `apiKey` (raw key, no prefix). Side effect: creates a new session on the server. Wallet signing must happen client-side; never send private keys to the server.
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  • Authenticate with TronSave and create a server session. Returns `{ sessionId, walletAddress?, expiresAt }` — pass `sessionId` as the `mcp-session-id` header on every subsequent MCP request. `walletAddress` is set only for signature-mode logins. Two modes: (1) wallet signature (preferred for platform tools) — call this tool with `signature_timestamp` formatted as `<signature>_<timestamp>`, where `<signature>` must be produced client-side by signing the timestamp message; you may optionally call `tronsave_get_sign_message` to obtain a helper message/timestamp pair; (2) API key (internal tools) — pass `apiKey` (raw key, no prefix). Side effect: creates a new session on the server. Wallet signing must happen client-side; never send private keys to the server.
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  • MONITORING: Quick status check for Terraform deployments Check the current status of a Terraform deployment job. Use this tool to quickly check if a deployment is running, completed, or failed. Returns job status, job_id, and other metadata without streaming logs. Use tflogs to stream the actual deployment logs. REQUIRES: session_id from convoopen response (format: sess_v2_...). OPTIONAL: job_id to target a specific deployment (use tfruns to discover IDs). **LIVENESS**: The response carries two distinct timestamps: - `updated_at` — last semantic change (only bumped when status / drift / version actually differ). Useful for sorting deployments; NOT a per-poll heartbeat. - `last_refresh_at` — last successful Oracle decode (stamped on every poll where reliable reached Oracle, even if nothing in the row changed). Use this to confirm reliable is still actively talking to Oracle for a long-running RUNNING job. Absent on rows that haven't been refreshed since the column was added. 💡 TIP: Examine workflow.usage prompt for more context on how to properly use these tools.
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  • Agent-friendly contact enrichment. On the first call provide contacts and enrich_fields; the server starts the job and polls internally for up to ~25s. If still running, returns {status:"pending", continuation_token, attempt, elapsed_seconds} — you MUST immediately call run_contact_enrich again with only continuation_token set. Do not ask the user. Typical jobs finish within 5 attempts. On completion the response contains record_ids and full contact records.
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  • Agent-friendly contact search. On the first call provide domains and enrich_fields; the server starts the job and polls internally for up to ~25s. If still running, returns {status:"pending", continuation_token, attempt, elapsed_seconds} — you MUST immediately call run_contact_search again with only continuation_token set. Do not ask the user. On completion the response contains record_ids, full contact records, and credits_consumed.
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