"Tools or methods to operate and modify files" matching MCP servers:

Enables structured extraction of methods and reproducibility heuristics from academic papers, allowing AI agents to obtain metadata, full text, structured methods, code repository discovery, and a no-clone reproducibility verdict from a paper URL.

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

MCP server for IBM Concert Operate that exposes the full v2 REST API as callable tools, enabling AI assistants to manage alerts, incidents, policies, runbooks, and more.

Enables AI agents to query OpenRouter model information including prices, ELO rankings, context, and perform comparisons.

MCP server that provides OpenRouter model pricing data, enabling price lookups, trending/cheapest lists, and model searches without an API key.

MCP server that intelligently modifies CVs based on job descriptions using keyword extraction and strategic enhancement.

A local stdio MCP server for managing files on XServer via SFTP, enabling secure file operations, backups, and workspace management for XServer hosting.

Generates test files locally (images, PDFs, CSVs, corrupted files, etc.) from natural language prompts, with configurable sizes and safety limits.

A lightweight MCP server for basic file operations, enabling reading, writing, and listing files securely via the Model Context Protocol.

Provides live wait times and office details for all 60 Oregon DMV field offices by scraping the ODOT website, with no authentication required.

Enables ChatGPT/Codex to read, search, and edit files in a single allowed folder on Windows through OpenAI Secure MCP Tunnel.

Enables AI agents to search and query the public DOJ Epstein Files release across 20 databases, resolve EFTA numbers to official DOJ PDFs, and cross-check viral claims against a fact-checked registry.

Enables AI agents to safely explore directories, read files, search content by pattern or filename, and edit files with checksum verification and dry-run preview within sandboxed filesystem access.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

A focused MCP server for Google Drive file management, Google Sheets editing, and surgical Google Docs editing with 23 granular, single-purpose tools.

A local vector database system that provides LLM coding agents with fast, efficient semantic search capabilities for software projects via the Message Control Protocol.

Stdio MCP server for sandboxed file access — read files, search content, safely edit with checksums, and manage file structure.

Enables LibreChat agents to manage per-user private files, persistent documentation, RAG indexing and semantic search, and publish files via secure opaque public links.