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"Methods to Extract Data from Files" matching MCP servers:

  • methods-mcp

    webwebb56
    A
    license
    -
    quality
    D
    maintenance
    Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.
    Last updated
    Apache 2.0

  • Skill-to-MCP

    biocontext-ai
    A
    license
    A
    quality
    C
    maintenance
    Converts AI Skills (following Claude Skills format) into MCP server resources, enabling LLM applications to discover, access, and utilize self-contained skill directories through the Model Context Protocol. Provides tools to list available skills, retrieve skill details and content, and read supporting files with security protections.
    Last updated
    3
    27
    Apache 2.0
  • Files.com MCP Server by Files-com

    Files.com MCP Serverofficial

    Files-com
    A
    license
    C
    quality
    B
    maintenance
    Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.
    Last updated
    65
    2
    MIT
  • EOSC Data Commons Search by EOSC-Data-Commons

    EOSC Data Commons Searchofficial

    EOSC-Data-Commons
    A
    license
    -
    quality
    A
    maintenance
    Enables natural language search and discovery of open-access scientific datasets through the EOSC Data Commons OpenSearch service. Provides tools to search datasets and retrieve file metadata using LLM-assisted queries.
    Last updated
    14
    MIT

  • Docs-to-AI

    dorianmeric
    A
    license
    -
    quality
    C
    maintenance
    Enables LLMs to query documents using semantic search, supporting PDFs, Word, Excel, and more. Organizes documents by topics from folder structure and provides advanced search features like phrase matching and date filtering.
    Last updated
    1
    MIT

  • MCP Files

    tspspi
    A
    license
    -
    quality
    C
    maintenance
    Provides a secure, constrained filesystem workspace for LLM agents to manage files, notes, and code artifacts via stdio or remote HTTP. It features granular access controls, including extension whitelisting, storage quotas, and immutable paths for safe automated file operations.
    Last updated
    BSD 3-Clause

  • QuantClaw Data

    yoniassia
    F
    license
    -
    quality
    -
    maintenance
    Provides access to a comprehensive financial intelligence platform featuring real-time market data, quantitative models, and alternative data sources. It enables users to perform advanced financial analysis including options analytics, portfolio modeling, and SEC filing research.
    Last updated

  • data-explore

    Mingwei2
    F
    license
    -
    quality
    D
    maintenance
    An MCP server for dataset exploration and analysis, enabling LLM clients to perform summary, correlation, distribution, missing value analysis, data cleaning, and statistical tests directly on CSV files.
    Last updated

  • uk-he-data-mcp

    wilgreeves-cmd
    A
    license
    A
    quality
    B
    maintenance
    MCP server to query UK higher-education open data including National Student Survey results, student outcomes, and graduate earnings. Data is downloaded locally from official sources and compared against benchmarks.
    Last updated
    5
    MIT

  • data-filter-mcp

    alxark
    A
    license
    A
    quality
    A
    maintenance
    Local MCP server that registers restricted Python filters and runs them against local JSON, YAML, and TXT files, enabling safe data filtering and file conversion.
    Last updated
    3
    6
    MIT

  • data-aggregator-mcp

    musharna
    A
    license
    A
    quality
    A
    maintenance
    Searches and fetches research datasets across Zenodo, DataCite (Dryad/Figshare/Dataverse/OSF), NCBI omics archives (GEO/SRA/BioProject), and the literature (PubMed/OpenAIRE) through one normalized model — deduplicating by DOI, expanding organism queries with NCBI Taxonomy synonyms, and bridging papers to the datasets they produced. Resolves citations and open-access full text, and downloads files.
    Last updated
    6
    2
    MIT