"PubMed" matching MCP servers:

A local MCP server enabling PubMed, PMC, and iCite API access via stdio for tools like search, fetch, full text, and citation counts.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

MCP server to batch download open-access PDFs from PubMed Central (PMC), supporting PMCID/PMID lookup, parallel downloads, and download reports.

Checks every reference of a LaTeX paper against Crossref, dblp, arXiv, DataCite, PubMed and OpenAlex records: whether each cited work exists, whether its metadata matches, and whether it was retracted. Read-only tools confined to the workspace, with no LLM in the verdict.

A standalone MCP server that searches multiple scholarly metadata providers (PubMed, Europe PMC, bioRxiv, Crossref, OpenAlex, Semantic Scholar, arXiv), deduplicates results, and returns ranked literature with optional open-access full-text retrieval from Europe PMC.

AI-operable research workspace integrating Zotero, Obsidian, and NotebookLM. Search papers (arXiv/Semantic Scholar/PubMed/CrossRef), ingest into Zotero, sync per-paper notes to Obsidian, verify NotebookLM briefs. All three external tools optional.

An MCP server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm.

Enables users to build and query a project-local literature database by ingesting papers from Semantic Scholar, PubMed, arXiv, and OpenAlex, caching open-access PDFs, extracting full text, ranking results, and exposing MCP tools for search, seeds, feedback, and pipeline status over stdio.

Enables AI assistants to query ClinicalTrials.gov and PubMed for research evidence, and to compare regulatory document changes against internal files, with strict read-only access and no ability to modify or export data.

This MCP server provides authoritative medical data from FDA, WHO, PubMed, RxNorm, and Google Scholar, enabling drug information lookup, health statistics retrieval, medical literature searching, and clinical guidelines access directly in AI workflows.

Read-only biomedical MCP server connecting PubMed, ClinicalTrials.gov, ClinVar, gnomAD, OncoKB, Reactome, KEGG, UniProt, PharmGKB, CPIC, OpenFDA, Monarch Initiative, GWAS Catalog, and more. One command grammar for all biomedical entities — genes, variants, diseases, drugs, trials, articles, phenotypes, pathways, proteins, diagnostics, and adverse events. 27 tools. Apache-2.0 license.

Integrates with EMRs like Cerner and Epic via FHIR to retrieve patient data, and provides medical research tools (PubMed, clinical trials, FDA) for clinical analysis.

Enables LLM-assisted biomedical literature screening and structured extraction from PubMed alerts, PMIDs, DOIs, and GEO accessions, with full-text retrieval and multi-provider LLM support.

A specialized MCP server for Claude Desktop that enhances AI-assisted medical learning by fetching and processing educational resources from PubMed, NCBI Bookshelf, and user-provided documents.

An MCP server that provides comprehensive medical information by querying authoritative APIs including FDA, WHO, PubMed, RxNorm, and Australia's PBS, enabling drug searches, health statistics, medical literature, drug nomenclature, and PBS subsidy queries.