"Tools or methods for organizing Org files and Org-roam nodes based on content" matching MCP servers:

MCP server for securely managing GitHub & GitLab credentials in an encrypted vault, allowing AI agents to retrieve tokens by org or group name automatically.

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.

This MCP server enables users to search and access documentation for community-developed n8n nodes and official built-in nodes. It provides token-optimized responses for discovering n8n packages and documentation directly through AI assistants.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

Extract content from URLs, documents, videos, and audio files using intelligent auto-engine selection. Supports web pages, PDFs, Word docs, YouTube transcripts, and more with structured JSON responses.

Lets AI assistants manage a self-hosted content hub: create, edit, publish, and update articles across nine platforms, refresh account article lists, and sync changes through natural language.

Enables AI agents to analyze a piece of content across 11 dimensions and receive ranked, scored recommendations among six cross-media output formats (PPT, infographic, comic, short video script, newsletter, reusable skill), then generate dispatch prompts for the chosen format. It also exposes the format catalog and profile schema as read-only tools, supporting batch routing of an entire content library.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

Enables AI agents to extract clean, structured web content (articles, tables, links, visual layouts) optimized for LLM token efficiency, with fast response times and optional JavaScript support.

Multi-platform content distribution — draft posts, repurpose content, generate carousels, schedule, analyze performance, create threads. 7 MCP tools.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

MCP server for publishing posts and retrieving metrics on social platforms like Telegram, with planned support for YouTube and Instagram.

A template for deploying an MCP server on Vercel, with example tools like roll_dice and get_weather.

MCP server that fetches and converts website pages into clean markdown for agents, with sitemap-based discovery, disk caching, and polite crawling (robots.txt, rate limiting).

MCP server that fetches raw HTML content from a given URL to provide web context to LLMs.

Enables assistants to publish readable replies and status updates to e-ink displays and Home Assistant, with switchable characters and state retrieval through MCP tools.

A specialized Model Context Protocol server that enhances AI-assisted medical learning by connecting Claude Desktop to PubMed, NCBI Bookshelf, and user documents for searching, retrieving, and analyzing medical education content.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

Provides SEO audits, content analysis, and domain overviews through an MCP server, including on-page, technical, and authority metrics with built-in browser rendering and anti-bot handling.

Enables deterministic calculations for AI API and subscription costs, meeting time zones, recurring schedules, and cron next-run previews, returning normalized inputs, units, assumptions, dated sources, and links to results.

MCP server exposing content contract validators (SEO.md, PRODUCTHUNT.md, LINKEDIN.md) as tools so AI agents can verify generated content against concrete rules without maintaining linters. It provides linting and JSON-LD export tools with config and content passed as parameters, not file paths.

Enables reading and verifying C2PA Content Credentials from images and videos through both embedded manifests and invisible watermarks. Supports direct filesystem access, URL checking, and provides structured provenance data including creator identity, AI generation info, and content authenticity.

Enables AI clients to browse instruments, items, dimensions, expert assignments, and calculate Content Validity Index (CVI) via a standard MCP interface.

An MCP server that uses AI to generate structured Asana project plans from diverse sources like text, PDFs, and meeting transcripts. It enables users to preview, generate, and directly sync detailed task lists, subtasks, and dependencies into Asana.

Enables AI agents to interact with the BulkClix platform for SMS, OTP, airtime, mobile money, bank transfers, data bundles, KYC, contacts, and account management via natural language.

MCP server that allows Claude AI to interact directly with MySQL databases, enabling query execution and table information retrieval through natural language.

Enables AI-driven batch refactoring of Movable Type content via the MT Data API using natural language instructions. It provides a secure workflow featuring automated backups, visual diff reports, and rollback capabilities for safe HTML transformations.

Enables high-precision detection, anonymization, encryption and decryption of personally identifiable information (PII) in text using GPT-4o-based detection and advanced cryptographic methods. Supports both deterministic encryption for searchable data and format-preserving encryption for structured identifiers.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.