"Tools or methods for editing files using diffs" matching MCP servers:

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

Upload, edit, and generate videos from everyone's favorite LLM and Video Jungle.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

MCP server that allows Claude AI to interact directly with MySQL databases, enabling query execution and table information retrieval through natural language.

Enables high-precision detection, anonymization, encryption and decryption of personally identifiable information (PII) in text using GPT-4o-based detection and advanced cryptographic methods. Supports both deterministic encryption for searchable data and format-preserving encryption for structured identifiers.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.

Provides deterministic tools for transforming, formatting, and inspecting structured data for AI agents.

Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.

A modular multi-server architecture providing development automation, JIRA management, and performance reporting for Claude Code. It features specialized tools for PR health analysis, code reviews, and generating comprehensive team and individual quarterly reports.

An MCP (Model Context Protocol) server implementation using HTTP SSE (Server-Sent Events) connections with built-in utility tools including echo, time, calculator, and weather query functionality.

Sub-15ms edge intelligence tools for Claude Desktop, Cursor, and LLM agent loops. Provides sub-millisecond LLM JSON repair, web-to-markdown token compression (cuts context tokens up to 90%), PII redaction, and RFC 5322 B2B email deliverability verification at zero marginal token cost.

Five general-purpose stdio MCP servers for SEO: access to SERP, Wordstat, Google Search Console, Yandex.Webmaster and Yandex.Metrica straight from Claude Code (or any MCP client). All tools are read-only, output is strict JSON. Not tied to a specific site: defaults (GSC property, Webmaster host, Metrica counter) are configured on the fly.

A production-grade MCP server that provides a centralized microservice toolkit for LLM agents, enabling web search and extensible tool integration.

Dynamic QR code platform for AI agents. Create, customize, and track QR codes without regenerating images. 37 tools covering 11 QR types (URL, vCard, WiFi, event…).

Enables LLMs to interact with Kibana through composable toolboxes for building dashboards, managing data, and handling alerts, among other operations.

Provides MCP-compatible AI clients with full access to a Flarum forum's API, enabling reading, searching, creating discussions, replying, moderation, and management of users, tags, and groups.

Guides problem-solving by breaking down complex problems into steps and recommending appropriate MCP tools for each stage, with confidence scores and rationales for tool suggestions.