"Tools or methods for editing files using diffs" matching MCP servers:

Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.

Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.

Upload, edit, and generate videos from everyone's favorite LLM and Video Jungle.

Enables read-only listing and reading of files in an Azure Files SMB share, enforcing each user's NTFS permissions per request.

A comprehensive MCP server providing tools for AI agents to interact with code, including reading symbols, importing modules, replacing text, and sending OS notifications.

Enables agents to quickly find and edit code in a codebase with surgical precision. Find symbols, edit them everywhere with tools for reading code blocks, searching/replacing text, and making precise line-based modifications.

一个基于FastMCP协议的文件向量化服务，支持自动目录监控、多格式文件处理和高效向量搜索，帮助构建个人或团队知识库。

Enables deterministic calculations for AI API and subscription costs, meeting time zones, recurring schedules, and cron next-run previews, returning normalized inputs, units, assumptions, dated sources, and links to results.

MCP server that allows Claude AI to interact directly with MySQL databases, enabling query execution and table information retrieval through natural language.

Enables high-precision detection, anonymization, encryption and decryption of personally identifiable information (PII) in text using GPT-4o-based detection and advanced cryptographic methods. Supports both deterministic encryption for searchable data and format-preserving encryption for structured identifiers.

Enables AI models to perform file operations, user management, automations, and more within Files.com's secure file transfer platform via the Model Context Protocol.

Provides deterministic tools for transforming, formatting, and inspecting structured data for AI agents.

Provides a secure, constrained filesystem workspace for LLM agents to manage files, notes, and code artifacts via stdio or remote HTTP. It features granular access controls, including extension whitelisting, storage quotas, and immutable paths for safe automated file operations.

Transforms any API into an intelligent MCP agent in seconds, enabling natural language interaction with APIs through the Model Context Protocol.

Enables AI agents to perform common utility tasks through a streamable HTTP MCP endpoint, including JSON inspection, regex testing, cron parsing, hashing, base64 encoding/decoding, URL analysis, color conversion, text diffing, CSV parsing, JWT decode/verification, Markdown-to-HTML rendering, and UUID/token generation without API keys.

Enables users to describe a project in an MCP client and work through pre-submission grant phases, including finding fitting programs, checking eligibility and blockers, pulling precedent from past awards, shortlisting, and drafting memos, budgets, and submission checklists. Coverage is full for US grants and partial (discovery and precedent only) for Canada, with no win-odds estimates or post-award reporting.

An MCP (Model Context Protocol) server implementation using HTTP SSE (Server-Sent Events) connections with built-in utility tools including echo, time, calculator, and weather query functionality.

Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.

A modular multi-server architecture providing development automation, JIRA management, and performance reporting for Claude Code. It features specialized tools for PR health analysis, code reviews, and generating comprehensive team and individual quarterly reports.

Enables AI agents to run passive, boundary, and gated active reconnaissance and web-security CLI tools (nmap, sqlmap, commix, httpx, ffuf, nikto, subfinder, and more) against authorized targets through a persistent, API-key-protected HTTP service. Scope gates, authorization windows, evidence capture, and a full audit trail are enforced in code so every tool call stays within the engagement's declared rules.

Free Industry 4.0 / IIoT tools, no API key or account: lint MQTT Sparkplug B topics, check a Unified Namespace (UNS) for naming and hierarchy problems, and run an industrial AI-readiness diagnostic for manufacturing digital transformation and smart-factory projects. Works in Claude Code, Codex and any MCP client.

Sub-15ms edge intelligence tools for Claude Desktop, Cursor, and LLM agent loops. Provides sub-millisecond LLM JSON repair, web-to-markdown token compression (cuts context tokens up to 90%), PII redaction, and RFC 5322 B2B email deliverability verification at zero marginal token cost.

Five general-purpose stdio MCP servers for SEO: access to SERP, Wordstat, Google Search Console, Yandex.Webmaster and Yandex.Metrica straight from Claude Code (or any MCP client). All tools are read-only, output is strict JSON. Not tied to a specific site: defaults (GSC property, Webmaster host, Metrica counter) are configured on the fly.

A production-grade MCP server that provides a centralized microservice toolkit for LLM agents, enabling web search and extensible tool integration.

Dynamic QR code platform for AI agents. Create, customize, and track QR codes without regenerating images. 37 tools covering 11 QR types (URL, vCard, WiFi, event…).

repo-release-tools mcp-server automates the software release process by managing version bumps, changelog generation, and releases. It streamlines repository maintenance by handling repetitive release tasks directly through your AI assistant.

Provides MCP-compatible AI clients with full access to a Flarum forum's API, enabling reading, searching, creating discussions, replying, moderation, and management of users, tags, and groups.

Guides problem-solving by breaking down complex problems into steps and recommending appropriate MCP tools for each stage, with confidence scores and rationales for tool suggestions.

Enables AI-driven 3D modeling and scene creation in Blender, allowing LLMs to create, modify, and manipulate objects, materials, and assets through natural language.

A comprehensive tool server for reading, merging, and extracting content from PDF files via local paths or direct URLs. It enables metadata retrieval, regex searching, and page-specific text extraction with built-in caching and workspace-restricted security.