"A server for running bioinformatics tools" matching MCP servers:

MCP server for rendering Mermaid diagrams and generating source-code diagrams, with tools to render text/files and produce dependency/class diagrams.

Architecture-index MCP tools for kernelee apps that combine static analysis and runtime wiring into a JSON index, enabling coding agents to query control flow and dependencies via the Model Context Protocol.

Provides tools for AI-powered graph analysis, including relationship extraction, adjacency matrix creation, and network centrality calculations. It enables users to perform complex structural analysis and generate interactive D3.js visualizations from structured data.

Translates natural language commands into structured geometric operations for a simulated CAD engine using LLMs. It enables users to create shapes, modify dimensions, and perform 3D operations like extrusion through the Model Context Protocol.

Provides UI architecture analysis for converting Figma designs or web pages into reusable UI code blocks with effort estimation in CSV format.

Enables AI assistants to perform Electronic Design Automation (EDA) tasks including Verilog synthesis, simulation, ASIC design flows, and waveform analysis through a unified interface.

Enforces a rigorous spec-driven engineering workflow for AI coding assistants, requiring requirements, design, and task planning before any code is written.

Enables LLMs to search and retrieve official Cisco network diagram icons as RGB PNG images, with metadata and category listing tools for building topology diagrams.

Connects Claude directly to Godot 4 projects to read and manipulate scenes, nodes, scripts, and assets within the editor. It enables real-time scene tree management, script editing, and resource configuration through a local Node.js bridge and GDScript plugin.

Generates engineer-grade SaaS specifications — design systems, database schemas, and RLS policies for AI build tools like Lovable, Cursor, and Claude Code. 4 tools, TypeScript, MIT licensed.

Gives AI agents instant access to software architecture, dependencies, and impact analysis through pre-computed sgraph models, replacing dozens of grep/read cycles with a single tool call.

Generates draw.io diagrams and architecture designs from natural language prompts using DrawX API, integrating with Claude, Cursor, and VS Code.

Tracks architectural decisions with testable predictions, outcome validation, and in-band feedback nudges to close decision loops for AI agents and teams.

Enables creating diagrams or generating code from diagrams in StarUML via prompts.

Enables creation of complete metamodels and model instances through natural language interaction by connecting Large Language Models to the MM-AR metamodeling platform.

An MCP server that generates professional infrastructure diagrams using the Python diagrams DSL, with first-class Azure support and GitHub Copilot integration for natural language diagram generation.

A full-featured MCP server that lets AI assistants create and edit tldraw diagrams programmatically with 30 tools across all 14 shape types.

Enables AI assistants like Claude to create and edit electronic circuit diagrams using the schemdraw library through the Model Context Protocol.

Provides AI assistants with comprehensive control over Unity Hub and Unity Editor through over 200 specialized tools for project management and scene manipulation. It enables users to perform complex tasks like script creation, asset management, and project builds using natural language commands.

Enables AI agents to programmatically create, modify, and analyze Draw.io diagrams through the Model Context Protocol. Supports generating architectural diagrams, flowcharts, and visualizations with bidirectional communication between AI systems and Draw.io.