"database" matching MCP servers:

Public read-only MCP server providing structured access to Atlarium habitat data and advisory functions for aquariums, terrariums, and related systems.

Enables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.

Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.

Enables natural language querying of EFSA's OpenFoodTox database containing 8,006 chemical substances with toxicity data, safety assessments, risk limits, and genotoxicity studies for food additives, pesticides, and contaminants.

Search 200M+ patents and scientific literature in natural language using PatSnap's global R&D intelligence database.

Enables searching biomedical images (X-rays, CT/MRI, clinical photos, etc.) from the Open-i database using natural language queries, returning image results as Markdown links.

Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.

MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.

An MCP server that provides tools for searching and fetching protein data from the UniProt database using the unipressed library.

An MCP server for querying the KEGG bioinformatics database, providing tools, resource templates, and guided prompts for pathways, genes, compounds, and more.

Enables querying the openFDA drug adverse event database for pharmacovigilance work-ups: case searches, counts and demographic/outcome breakdowns, disproportionality measures (ROR/PRR with Mantel-Haenszel adjustment), and empirical Bayes (MGPS/EBGM) signal scores, including bulk screening and stratification by sex, age, or year alongside confounder-adjusted analyses.

Enables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.

Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.

An MCP server that provides access to PubMed and NCBI's biomedical literature database for searching articles, retrieving metadata, and tracking citations. It enables users to explore related research, browse MeSH vocabulary, and find free full-text links.

This MCP server generates individualized meal plans for children with chronic kidney disease (CKD) based on KDIGO 2024/PRNT 2020/KRCP 2025 guidelines, incorporating patient age, CKD stage, allergies, dietary culture, and diet diary analysis. It provides deterministic nutrient computations and tools for meal plan generation, food database lookup, and risk analysis.

Converts messy metabolite names into standard database identifiers (KEGG, HMDB, ChEBI, PubChem, InChIKey) and performs crosswalking to Mouse-GEM for metabolic model input, with deterministic tools and an LLM reasoning layer for identity disambiguation.

Enables searching and fetching articles from PubMed, a database of biomedical literature.

A comprehensive Model Context Protocol (MCP) server for accessing the SureChEMBL chemical patent database.

Enables an MCP host to search patients, review latest laboratory results, compare values over time, record new results, and manage pending exams using a local SQLite database with synthetic clinic data.

A fastmcp-based tool for writing prompts against data in the NMDC database.