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"Understanding Call Hierarchy in Software Development or Programming" matching MCP servers:

  • uniprot-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.
    Last updated
    15
    MIT

  • hgnc-link

    berntpopp
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    license
    A
    quality
    A
    maintenance
    Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.
    Last updated
    9
    MIT

  • TransBench

    kayomarz97
    F
    license
    A
    quality
    B
    maintenance
    TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.
    Last updated
    3

  • ChemCP

    scottmreed
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    license
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    quality
    D
    maintenance
    Renders interactive 2D molecular structure diagrams from SMILES notation and computes molecular properties like molecular weight, LogP, and TPSA, directly in the chat.
    Last updated
    1
    36
    1
    ISC

  • athena-tools

    nous-ehr
    F
    license
    A
    quality
    B
    maintenance
    A Claude Code extension that embeds a senior athenahealth integration engineer in your development workflow, proactively catching data loss bugs and guiding safe DataView queries and API integrations.
    Last updated
    12
    1

  • Pedigree MCP Server

    plemio
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    license
    A
    quality
    B
    maintenance
    Generates family pedigree tree diagrams as PNG or SVG images using standard genetic notation compliant with Bennett 2008/2022 NSGC guidelines. Supports comprehensive genealogical features including conditions, genetic testing results, twin relationships, carrier status, and adoption indicators.
    Last updated
    2
    16
    10
    MIT

  • hpo-link

    berntpopp
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    license
    A
    quality
    B
    maintenance
    MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.
    Last updated
    17
    MIT

  • plant-genomics-mcp

    musharna
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    license
    A
    quality
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    ▎ Provides 32 tools for plant-genomics locus lookup across 11 free public backends (Ensembl Plants, Phytozome, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR). Takes a TAIR-style locus plus optional organism and returns gene metadata, functional/pathway annotation, interactions, co-expression, and literature — in single-locus, batch, and cross-source synthesis.
    Last updated
    50
    3
    MIT

  • NPI Registry MCP Server

    eliotk
    A
    license
    A
    quality
    D
    maintenance
    A Model Context Protocol (MCP) server for searching the National Provider Identifier (NPI) registry. This server provides tools to search and retrieve information about healthcare providers and organizations in the United States.
    Last updated
    1
    4
    Python
    MIT

  • Genomic-Agent-Discovery

    HelixGenomics
    A
    license
    A
    quality
    B
    maintenance
    Upload your raw DNA file from 23andMe, AncestryDNA, MyHeritage, FamilyTreeDNA, or any VCF -- and watch a team of AI agents fan out across 16+ public genomics databases, share discoveries with each other in real time, and produce a comprehensive health report. Everything runs on your machine. Nothing is uploaded anywhere.
    Last updated
    24
    16
    MIT

  • Define-XML MCP Server

    defineEditor
    F
    license
    A
    quality
    D
    maintenance
    A TypeScript MCP server for interacting with CDISC Define-XML 2.0 and 2.1 files, enabling users to load, search, and retrieve clinical data metadata including datasets, variables, and codelists. It supports local file processing with document caching and provides responses in both JSON and Markdown formats.
    Last updated
    13

  • Doktor MCP Server

    VanguardiaAI
    A
    license
    A
    quality
    D
    maintenance
    Enables AI assistants to search the doktor.mx directory for over 56,000 verified doctors and medical specialists across Mexico. It provides tools for verifying professional licenses, finding specialists by symptoms or conditions, and checking medical insurance compatibility.
    Last updated
    10
    50
    MIT