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license-
qualityC
maintenanceMCP server to batch download open-access PDFs from PubMed Central (PMC), supporting PMCID/PMID lookup, parallel downloads, and download reports.
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"Tools and methods for extracting text from PDF files" matching MCP servers:
- Alicense-qualityAmaintenanceEnables clinical question answering via OpenEvidence with citation verification, including tools to ask questions, retrieve results, and follow up, plus an integrated skill to check citations against primary sources.3MIT
- Flicense-qualityCmaintenanceProvides FHIR resource validation, synthetic test fixture generation, and HIPAA-safe logging review as MCP tools for AI agents.
- FlicenseAqualityBmaintenanceA Claude Code extension that embeds a senior athenahealth integration engineer in your development workflow, proactively catching data loss bugs and guiding safe DataView queries and API integrations.121
- FlicenseAqualityCmaintenanceExposes four CMS public datasets as callable tools in Claude conversations, enabling natural-language real-world evidence analytics without SQL expertise.61
- Alicense-qualityDmaintenanceEnables deep probabilistic analysis of single-cell omics data using scvi-tools through natural language. Supports SCVI for scRNA-seq analysis, SCANVI for cell type annotation, TOTALVI for multi-modal RNA/protein data, and PEAKVI for scATAC-seq analysis.MIT
- Alicense-qualityDmaintenanceA specialized MCP server for Metal-Organic Framework research that provides tools for database searching, structural optimization, and energy calculations via ASE. It enables scientific workflows by allowing users to interact with MOF data and perform chemical simulations through a standard SSE interface.MIT
- AlicenseAqualityDmaintenanceEnables searching and fetching articles from PubMed, a database of biomedical literature.21MIT
- AlicenseAqualityDmaintenanceEnables interaction with the CEDAR (Center for Expanded Data Annotation and Retrieval) metadata repository to fetch templates and retrieve template instances. Supports querying structured metadata and biomedical data annotations through the CEDAR platform.2MIT
- AlicenseAqualityDmaintenanceEnables querying FDA drug label information including adverse reactions, warnings, and indications via natural language.591GPL 3.0
- AlicenseBqualityDmaintenanceProvides programmatic access to ClinicalTrials.gov API with 18 specialized tools for searching, analyzing, and retrieving detailed information about 400,000+ clinical trials worldwide, including filtering by condition, location, phase, sponsor, eligibility criteria, and outcomes.17183MIT
- AlicenseDqualityDmaintenanceProvides access to an AI medical chatbot API for healthcare assistance, enabling natural language interactions such as neurosurgery queries.21MIT
- Alicense-qualityCmaintenanceEnables searching cryo-EM density maps in EMDB and raw datasets in EMPIAR, with filtering by resolution, keyword, and cross-referencing between the two databases.MIT
- Flicense-qualityBmaintenanceAn MCP server for clinical workflows with tools for patient lookup, appointment booking, prescriptions, drug interactions, symptom triage, lab results, insurance eligibility, and telehealth, enforcing role-based access control and audit logging.2
- Flicense-qualityDmaintenanceThis server enables interacting with the National Digital Health Mission's Health Information User (HIU) API, allowing agents to access and manage health information through the Multi-Agent Conversation Protocol.
- MIT
- AlicenseAqualityCmaintenanceProvides structured PubMed literature data for LLM agents, supporting search, caching, and open-access full-text downloads via the MCP protocol.54011Apache 2.0
- AlicenseAqualityDmaintenanceA local MCP server enabling PubMed, PMC, and iCite API access via stdio for tools like search, fetch, full text, and citation counts.101602MIT
- AlicenseAqualityBmaintenanceAn MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants. It lets any MCP-capable client search studies, series and instances, inspect metadata, read Structured and Encapsulated PDF Reports, and render image frames — all through natural language.9563MIT
- AlicenseAqualityDmaintenanceAn MCP server that provides tools for searching and fetching protein data from the UniProt database using the unipressed library.2MIT