"SQLite" matching MCP servers:

• hpo-link

  berntpopp

  A

  license

  A

  quality

  B

  maintenance

  MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.

  Last updated 2026-07-16

  17

  MIT

• AlphaFold Sovereign MCP

  smaniches

  A

  license

  A

  quality

  B

  maintenance

  Integrates AlphaFold DB and eight other biomedical data sources into MCP tools for variant clinical reporting, disease-target analysis, structural intelligence, and drug repurposing, with results persisted to a local SQLite knowledge graph.

  Last updated 2026-07-17

  29

  3

  Apache 2.0

• HealthLedger MCP

  Cole-Will-I-Am

  A

  license

  B

  quality

  B

  maintenance

  A local-first, model-agnostic MCP server that stores personal health data in a SQLite file and provides analysis-ready views for any AI client to log, retrieve, and reason over health records.

  Last updated 2026-07-09

  79

  MIT

• Claims Data MCP Server

  Rutvikmerai

  F

  license

  -

  quality

  C

  maintenance

  Enables natural language querying of healthcare claims data by exposing a SQLite database with read-only SQL tools, allowing users to ask questions in plain English and get answers backed by real database queries.

  Last updated 2026-07-06

• CIViC MCP Server

  QuentinCody

  F

  license

  -

  quality

  D

  maintenance

  Enables structured queries and data analysis of cancer genomics information by interfacing with the Clinical Interpretation of Variants in Cancer (CIViC) API. It converts GraphQL responses into queryable SQLite tables for efficient clinical interpretation and natural language interaction.

  Last updated 2026-07-02