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"SPARQL query language and tools" matching MCP servers:

  • SPARQL MCP Server

    sib-swiss
    A
    license
    -
    quality
    D
    maintenance
    Enables users to write and execute SPARQL queries against open-access SPARQL endpoints by providing relevant query examples, schema information, and endpoint metadata. Supports querying biological databases like UniProt and Bgee through natural language interactions.
    Last updated
    9
    MIT

  • uniprot-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.
    Last updated
    15
    MIT

  • mgi-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.
    Last updated
    13
    1
    MIT

  • mosaic-mcp

    sourabhnk
    A
    license
    A
    quality
    B
    maintenance
    Pre-clinical drug discovery intelligence MCP server providing 44 tools to query 800+ drug targets, 12K+ compounds, 46K+ papers, 18K+ clinical trials, and 16K+ patents.
    Last updated
    44
    Apache 2.0
  • PDBe MCP Servers by PDBeurope

    PDBe MCP Serversofficial

    PDBeurope
    A
    license
    A
    quality
    A
    maintenance
    Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data.
    Last updated
    33
    36
    Apache 2.0

  • TogoMCP

    dbcls
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that gives AI assistants access to biological and biomedical RDF databases via SPARQL at the RDF Portal, as well as selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, Reactome, Rhea, MeSH, and more).
    Last updated
    29
    11
    MIT

  • CEDAR MCP Server

    BACH-AI-Tools
    A
    license
    A
    quality
    D
    maintenance
    Enables interaction with the CEDAR (Center for Expanded Data Annotation and Retrieval) metadata repository to fetch templates and retrieve template instances. Supports querying structured metadata and biomedical data annotations through the CEDAR platform.
    Last updated
    2
    MIT

  • NiiVue MCP Server

    gaiborjosue
    A
    license
    A
    quality
    D
    maintenance
    Provides fast lexical and optional semantic search over NiiVue neuroimaging visualization library documentation and API reference. Enables LLMs to query guides, retrieve API documentation from TypeScript source, and access structured information through cached BM25 and embedding-based search.
    Last updated
    6
    45
    1
    BSD 2-Clause "Simplified"

  • gnomAD MCP Server

    koido
    A
    license
    B
    quality
    C
    maintenance
    Provides a programmatic interface to the Genome Aggregation Database (gnomAD) API across versions v2.1.1, v3.1.2, and v4.1.0. It enables users to query gene metadata, variant information, population frequencies, and ClinVar data through a unified schema.
    Last updated
    12
    5
    Apache 2.0

  • cxg-census-mcp

    MaxMLang
    A
    license
    B
    quality
    C
    maintenance
    Enables LLM agents to query the CZ CELLxGENE Census single-cell atlas with ontology-aware filters, cost caps, and full provenance, allowing natural language questions about cell types, tissues, and gene expression.
    Last updated
    13
    MIT

  • STRING-MCP

    MCPmed
    A
    license
    B
    quality
    D
    maintenance
    A Model Context Protocol server that provides tools for interacting with the STRING database to analyze protein-protein interaction networks and functional enrichment. It enables users to map protein identifiers, retrieve interaction data, and generate biological network visualizations through natural language interfaces.
    Last updated
    11
    3
    BSD 3-Clause