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    An interface for the Nipoppy neuroimaging framework that enables AI agents to list files and manage clinical datasets. It facilitates interaction with neuroimaging data organized according to the Brain Imaging Data Structure (BIDS) standard.
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    MIT
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    A specialized MCP server for Metal-Organic Framework research that provides tools for database searching, structural optimization, and energy calculations via ASE. It enables scientific workflows by allowing users to interact with MOF data and perform chemical simulations through a standard SSE interface.
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    MIT
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    Provides a natural language interface for single-cell RNA-Seq analysis using the decoupleR framework. It enables users to perform biological pathway inference, data clustering, and visualization through MCP-compatible AI clients.
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    Provides a natural language interface for inferring Copy Number Variations (CNVs) from scRNA-Seq data using the infercnvpy framework. It enables users to perform data preprocessing, CNV inference, and visualization through chromosome heatmaps, UMAP, and t-SNE plots.
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    A local-first, family-scale medical record framework that provides a Python CLI engine and MCP server for ingesting, deduplicating, querying, and generating medical records from source documents.
    Last updated