"Java command reference and usage" matching MCP servers:

Enables querying organism taxonomy, OBO reference terms, food and nutrition composition, organism and weather observations, and Wikidata alignments through nine MCP tools, with keyed source credentials resolved server-side.

MyChart MCP Server

An MCP server and TypeScript client SDK that gives AI assistants access to OOREP's homeopathic repertory and materia medica reference data, enabling natural language searches for symptoms, remedies, rubrics, and repertorization across 12+ repertories and 600+ remedies.

Enables AI agents to resolve and cross-reference biological entities such as genes, proteins, and aliases across authoritative databases like HGNC, NCBI Entrez, and UniProt, with confidence scores and source citations.

Russian drug reference for AI agents: check ГРЛС registration, get a drug card, look up ЖНВЛП price caps, check recalls, and link the official instruction straight from the state registers.

A reference MCP server for clinic scheduling and intake, demonstrating production patterns like tenant isolation, idempotent writes, and structured errors using synthetic data.

Provides fast lexical and optional semantic search over NiiVue neuroimaging visualization library documentation and API reference. Enables LLMs to query guides, retrieve API documentation from TypeScript source, and access structured information through cached BM25 and embedding-based search.

Enables medication reference workflows including drug search, dosing calculations, Taiwan regulatory lookups, hospital prescription helpers, and educational PK/DDI simulation.

Retrieve genomic data from EGA, ENA, ENCODE, GEO and NCBI, read bounded regions from indexed BAM/CRAM, VCF and bigWig files, and query source-attributed reference evidence. Runs locally with 23 MCP tools. MIT-licensed; research use.

MCP server for controlling UCSF ChimeraX molecular visualization software, enabling command execution, screenshots, structure analysis reports, and session management.

Enables querying US regulated-care providers (GLP-1 clinics) with tools for searching, retrieving details, and checking compliance, using natural language or function calls.

Enables querying and accessing hivtools data through a REST API and MCP-compatible tools.

MCP server for connecting Claude Desktop to FHIRfly healthcare reference data APIs, enabling lookup of drugs, providers, clinical codes, and more.

An MCP server for healthcare intake forms that lets AI agents import blank PDFs, create patient fill links, and retrieve completed PDFs while keeping PHI out of the model context.

Agent-callable canine genomics API providing breed-stratified allele frequencies, pathogenicity predictions, and variant-gene-breed-disease knowledge graph for dog DNA.

Provides access to Allen Institute for Neural Dynamics (AIND) metadata and data assets through MongoDB queries, aggregation pipelines, NWB file exploration, and AI-powered data summaries.

Bridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.

Enables building and analyzing signalling networks from interaction databases through a Model Context Protocol server.

A Model Context Protocol (MCP) server that enables AI agent access to Synapse entities such as Datasets, Projects, Folders, Files, Tables, and more.

Enables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.