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"How to run Docker and view logs" matching MCP servers:
- Alicense-qualityDmaintenanceEnables querying and exploring PhysioNet biomedical datasets via BigQuery, with tools to list accessible datasets, view schemas, inspect tables, and run SQL queries.10MIT
- FlicenseAqualityDmaintenanceEnables AI assistants to clean PDB structures and run initial-stage energy relaxation for biomolecular modeling. It provides a structured workflow for preparing structures before production molecular dynamics or coarse-graining pipelines.9
- AlicenseAqualityBmaintenanceA high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.25412MIT
- FlicenseAqualityCmaintenanceExposes each stage of the Champollion sulcal embedding pipeline as MCP tools, enabling agents to run, monitor, and debug the pipeline without manual shell commands.17
FHIRfly MCP Serverofficial
Alicense-qualityBmaintenanceMCP server for connecting Claude Desktop to FHIRfly healthcare reference data APIs, enabling lookup of drugs, providers, clinical codes, and more.222MIT- Alicense-qualityFmaintenanceProvides access to Allen Institute for Neural Dynamics (AIND) metadata and data assets through MongoDB queries, aggregation pipelines, NWB file exploration, and AI-powered data summaries.MIT
- Alicense-qualityDmaintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.2BSD 3-Clause
snowstorm-mcp-serverofficial
Alicense-qualityAmaintenanceEnables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.7Apache 2.0
galaxy-mcpofficial
Alicense-qualityAmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.37MIT- Alicense-qualityCmaintenanceEnables access to the IUPHAR/BPS Guide to PHARMACOLOGY database for querying drug targets, ligands, and pharmacological data without API keys.7MIT
- Alicense-qualityDmaintenanceEnables interaction with FHIR resources on Google Cloud Healthcare API through a SmartOnFHIR gateway secured by Firebase Auth, providing access to patient data, medical records, and medical research tools like PubMed.1MIT
- Alicense-qualityCmaintenanceEnables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.2MIT
- Alicense-qualityDmaintenanceEnables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.18MIT
- Alicense-qualityCmaintenanceMCP-native scientific skills for reproducible computational biology and AI-driven drug-discovery workflows. It combines deterministic scientific tools with an MCP server to give AI agents real computational capabilities.Apache 2.0
- Alicense-qualityDmaintenanceProvides access to BioThings.io APIs for comprehensive gene and variant annotations, enabling seamless integration of biological data into workflows.1,3456MIT
- Alicense-qualityCmaintenanceMCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.1MIT
- Alicense-qualityCmaintenanceEnables querying and browsing ontologies from the EBI Ontology Lookup Service, including searching for terms, retrieving term details, and navigating ontology hierarchies via natural language.11MIT
- Alicense-qualityCmaintenanceAccess to 1000 Genomes Project dataset, hosted online in Dnaerys variant store2Apache 2.0
- Alicense-qualityCmaintenanceEnables AI agents to query the PomBase fission yeast model-organism database for genetic and molecular data through the Pipeworx MCP gateway.1MIT
