"High-Quality PDF Extraction to Text with Tokenization and Accurate Processing of Complex Layouts" matching MCP servers:

Enables searching a manually curated database of stable macromolecular protein complexes by protein or complex name, gene, GO term, or biological process, and fetching individual records by accession to retrieve subunits with UniProt identifiers, biological roles, and stoichiometry. Complements UniProt, IntAct, and STRING, and can be used keyless over a hosted gateway endpoint or run locally over stdio.

MCP server to batch download open-access PDFs from PubMed Central (PMC), supporting PMCID/PMID lookup, parallel downloads, and download reports.

Enables ingestion of HL7 v2, ASTM, and JSON control results, Westgard multirule evaluation, automatic patient-result holds, explainable root-cause investigation, and supervisor-approved CAPA workflows for clinical laboratories. Agents can also establish targets, compute Levey-Jennings and sigma statistics, and verify corrective actions before a supervisor lifts a hold.

Enables MCP-compatible AI clients to validate healthcare claims data quality by running completeness, integrity, and temporal checks on CSV files via five callable tools, including profiling and full scans.

Enables natural-language querying of a mock legacy healthcare database and returns validated FHIR resources (Patient, Observation, Condition).

Enables AI agents to query free biomedical and pharmaceutical APIs for clinical trials, drug data, molecular structures, adverse events, and research literature.

Enables AI assistants to read COVID-19 lateral flow test results from photographs by calling a deployed computer-vision pipeline, returning verdicts like positive or negative with confidence.

Provides oncology data (research, news, FDA approvals, clinical trials) and IBM MAMMAL biomedical predictions (PPI, DTI, ClinTox) as MCP tools. Allows AI agents to query cancer datasets and run predictions through a remote MCP server.

Enables calculation of fractional sodium and urea excretion from serum and urine chemistries, automatically selecting the appropriate index during diuretic therapy and classifying renal hydration status.

Enables computation of sodium and urea fractional excretion from serum and urine chemistries, automatic diuretic-aware switching to urea-based assessment, and classification of prerenal hypoperfusion versus intrinsic acute tubular necrosis.

MyChart MCP Server

Enables biomedical research workflows via MCP, including experiment and document search, PDF text extraction, evidence retrieval, and validation with provenance tracking.

Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.

This server processes 2D Center of Pressure (COP) data to calculate metrics such as 95% confidence ellipse area, sway velocity, and the Romberg Quotient for postural stability analysis.

Enables analysis of 2D center-of-pressure statokinesigram trajectories, computing 95% confidence ellipse area, sway velocity, postural stability index, fall-risk tier, and Romberg Quotient for sensory re-weighting comparisons.

Provides secure access to VA's VistA electronic health record system, enabling AI applications to retrieve and summarize patient medical records for clinical staff.

Enables AI agents to rank US healthcare organizations for clinical trial site feasibility, predicting patient accrual for a Graves' disease protocol using claims and registry data.

Enables semantic retrieval and assembly of ICD-10-CM value sets from natural language descriptions for clinical cohort definitions.

Connects Claude to the U.S. National Library of Medicine MeSH APIs to search and retrieve medical authority data, descriptors, and qualifiers. It enables library and metadata staff to perform subject analysis and confirm terminology within an AI-assisted cataloging workflow.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

Exposes 24 evidence-grounded medical skills as JSON-RPC tools over stdio, letting agents run deterministic clinical calculators, PHI de-identification, negation-preserving multilingual parsing, and drug interaction checks locally with no token cost. It also enforces provenance and safety gates so high-risk dosing or prescribing decisions require documented clinical records rather than model inference.

Grounds gene-nomenclature work in the HUGO Gene Nomenclature Committee (HGNC) dataset, enabling resolution of gene symbols and IDs to canonical HGNC identifiers, plus cross-references and batch operations.

An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.

Scholarly integrity and papers — citation checks, literature/PubMed search, academic experts, PDF tables (6 MCP tools).

Enables querying and monitoring Brazilian Federal Council of Medicine resolutions on AI, telemedicine, and electronic medical records, with a local searchable copy and official document links.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

Enables natural language querying of brain volumes (NIfTI) with a fixed set of tools, returning visualizations and reproducible nilearn code.

Enables automated assessment of research manuscripts against the TARGET reporting guideline for target trial emulation, providing item-by-item scoring with evidence and provenance.

MCP server for automated ICD-10 medical coding. Code clinical text to ICD-10-CM diagnoses, search 74,000+ codes, and de-identify PHI via the AutoICD API.

MCP server for the Swiss Federal Office of Public Health Infectious Disease Dashboard, providing access to epidemiological surveillance data for 51 pathogens across Switzerland, including influenza, COVID-19, measles, and wastewater surveillance.