"Free and open-source coding assistants" matching MCP servers:

Enables interaction with Open Dental practice management software, allowing reading of patients, appointments, providers, procedures, and recalls, as well as writing communications back to patient charts via MCP clients.

Enables AI coding agents to perform end-to-end medical image analysis locally, from inspecting CT/MRI/X-ray studies and running containerized segmentation models like MedSAM2, TotalSegmentator, and HD-BET to refining masks, measuring volumes, and writing reports. It pairs preset or custom guideline protocols with a code-customizable viewer that renders images back to agents as annotated PNGs and to humans as interactive HTML.

Enables AI assistants to interact with the Open Targets Platform API to search and retrieve comprehensive data about target-disease associations, drugs, genes, and drug discovery information through GraphQL queries.

Enables AI-driven pharmacogenomic analysis by querying structured genetic variant, drug response, and disease risk data. Supports natural language questions about medications, traits, and health risks based on user genome data, with privacy-first local execution.

Read-only access to a curated, evidence-labelled corpus of mTOR research: studies, entities, signed pathway relations with supporting and conflicting evidence, and open questions.

Enables AI assistants to access Medikode's medical coding platform for validating CPT/ICD-10 codes, performing chart quality assurance, parsing EOBs, calculating RAF scores, and extracting HCC codes from clinical documentation.

Enables MCP-compatible AI assistants to look up clinical variants and batch-annotate NGS spreadsheet outputs via ClinVar, gnomAD, and VarSome. Provides tools for variant lookup, Excel inspection, and folder-level batch processing.

Provides a six-tool research-assistance workflow for CRC-LNM cases using precomputed CT, pathology features, and clinical values. Enables multimodal analysis and research queries on deidentified cases.

MCP server that connects AI assistants to a live Ketcher window, the open-source web-based chemical structure editor. Draw, edit, and organize structures directly in the canvas you have open.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

MyChart MCP Server

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

Enables querying Anvisa's open data for drug registration status and recent medical devices, with heuristic AI-use classification using a locally hosted LLM.

MCP server for automated ICD-10 medical coding. Code clinical text to ICD-10-CM diagnoses, search 74,000+ codes, and de-identify PHI via the AutoICD API.

Enables MCP-compatible agents to answer open questions about NHS provider performance using live waiting-time data from RTT and My Planned Care, supplemented by CQC quality ratings.

Enables read-only consultation of the latest published content on AI applied to medicine—articles, news, podcasts, lessons, events, conferences and repositories—through tools to list recent items, search by topic, and open item summaries with links.

Enables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.

An MCP server that provides direct access to PubMed and PubMed Central via the NCBI E-utilities API. It enables AI models to search biomedical literature, retrieve detailed article metadata, and download open-access full texts.

Enables AI assistants to answer healthcare REIT portfolio questions with deterministic, provable answers grounded in Omega Healthcare 10-K filings and CMS nursing home data, including status, caveats, and provenance.

MCP server that turns a medRxiv DOI into clean markdown full text and provides free, relevance-ranked preprint search via Europe PMC.

Enables searching biomedical images (X-rays, CT/MRI, clinical photos, etc.) from the Open-i database using natural language queries, returning image results as Markdown links.

Provides structured PubMed literature data for LLM agents, supporting search, caching, and open-access full-text downloads via the MCP protocol.

Enables AI assistants to query and read data on DICOM servers (PACS, VNA, etc.).

MCP server to batch download open-access PDFs from PubMed Central (PMC), supporting PMCID/PMID lookup, parallel downloads, and download reports.

Enables LLM clients and agents to produce realistic synthetic medical referral letter PDFs — a German Überweisungsbrief/Arztbrief or the same letter in another language — either from structured JSON with deterministic, seeded rendering or from a free-text description written by a configured LLM. Each call returns the finished PDF as an embedded resource plus the completed letter content and its seed as structured data.

Enables LLMs to search LOINC terms with free-text, relevance-ranked, and faceted queries via the LOINC Search API, mirroring the loinc.org/search experience.

An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

Enables LLM agents to search biomedical literature, retrieve article details, find related papers, manage caching, and download open-access full texts through MCP with structured, agent-friendly responses.

Enables checking whether a medicine has a reported shortage in Portugal (Infarmed monitoring, export-suspension and prior-notification lists) and finding pharmacies in a municipality that are on duty today or open now, with addresses, phone numbers and distances. Also surfaces the relevant help lines and next steps, read-only from public sources and without pharmacy stock data.

Provides safe read-only access to synthetic healthcare data via FHIR R4, enabling AI assistants to search patients, retrieve vitals, and summarize conditions using a public sandbox.