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"Executing terminal commands and retrieving log outputs" matching MCP servers:

  • SiLA MCP Server

    ahueber
    F
    license
    -
    quality
    -
    maintenance
    Enables AI assistants to interact with laboratory devices via a SiLA server, allowing querying device info, listing commands, executing commands, and monitoring status.

  • Gigwa-MCP

    gkanogiannis
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that interfaces with Gigwa for genotyping data import, analysis, and audit, enabling users to perform complex workflows through natural language commands.
    29
    Apache 2.0

  • loinc-mcp

    robsyc
    A
    license
    A
    quality
    D
    maintenance
    Enables searching LOINC codes and retrieving detailed information including panel members and answer options via the LOINC Search API.
    2
    1
    MIT

  • PubMed MCP Server

    emi-dm
    F
    license
    A
    quality
    D
    maintenance
    Enables searching and retrieving detailed information from PubMed articles using the NCBI Entrez API. Supports configurable search parameters including title/abstract filtering and keyword expansion to find relevant scientific publications.
    1

  • mcp-pubmed

    PetrefiedThunder
    A
    license
    A
    quality
    D
    maintenance
    An MCP server that provides access to PubMed and NCBI's biomedical literature database for searching articles, retrieving metadata, and tracking citations. It enables users to explore related research, browse MeSH vocabulary, and find free full-text links.
    6
    MIT

  • NIH Research MCP Demo

    vdeeplearning
    F
    license
    A
    quality
    C
    maintenance
    Enables interaction with synthetic NIH-style clinical research data through tools for searching publications, querying patient metadata, analyzing AAA measurements, and retrieving protocol guidance.
    5

  • BioNext-mcp

    Cherine0205
    A
    license
    A
    quality
    D
    maintenance
    Enables bioinformatics analysis through natural language conversations with Claude Desktop, automatically generating and executing Python scripts to produce HTML reports and visualizations.
    3
    13
    9
    MIT

  • STRING MCP Server

    munch-group
    A
    license
    B
    quality
    D
    maintenance
    Provides access to the STRING protein-protein interaction database for mapping identifiers, retrieving interaction networks, and performing functional enrichment analysis. It enables users to explore protein partners, pathways, and cross-species homology through natural language interactions.
    9
    1
    ISC

  • Protein MCP Server

    gqy20
    A
    license
    B
    quality
    D
    maintenance
    Enables searching, retrieving, and downloading protein structure data from the RCSB Protein Data Bank. Supports intelligent protein structure search, comprehensive data retrieval, and multiple file format downloads for bioinformatics research.
    3
    MIT

  • ChiCTR MCP Server

    PancrePal-xiaoyibao
    A
    license
    B
    quality
    D
    maintenance
    Enables querying clinical trial information from the Chinese Clinical Trial Registry (ChiCTR) by searching trials with keywords, registration numbers, or years, and retrieving detailed trial information.
    4
    49
    6
    Apache 2.0

  • PubMed Advanced MCP Server

    SuyashEkhande
    A
    license
    B
    quality
    D
    maintenance
    This MCP server provides 16 intelligent tools for searching, retrieving, and linking biomedical literature from PubMed and PMC. It enables LLM applications to perform complex queries, batch processing, and cross-database linking.
    16
    8
    MIT

  • Clinical Trials MCP Server

    BACH-AI-Tools
    A
    license
    B
    quality
    D
    maintenance
    Provides programmatic access to ClinicalTrials.gov API with 18 specialized tools for searching, analyzing, and retrieving detailed information about 400,000+ clinical trials worldwide, including filtering by condition, location, phase, sponsor, eligibility criteria, and outcomes.
    17
    18
    3
    MIT

  • HealthLedger MCP

    Cole-Will-I-Am
    A
    license
    B
    quality
    B
    maintenance
    A local-first, model-agnostic MCP server that stores personal health data in a SQLite file and provides analysis-ready views for any AI client to log, retrieve, and reason over health records.
    79
    MIT
  • xcircl by xcircl

    xcirclofficial

    xcircl
    A
    license
    -
    quality
    B
    maintenance
    Enables querying US regulated-care providers (GLP-1 clinics) with tools for searching, retrieving details, and checking compliance, using natural language or function calls.
    2
    MIT