"Design and prototyping software - Figma" matching MCP servers:

Enables LLM agents to design proteins, predict structures, score interfaces, and run molecular dynamics simulations through a unified interface.

A Claude Code plugin and MCP server for end-to-end clinical trial design.

An MCP server that gives LLM agents access to computational protein design tools.

Enables anaerobic digester design from feedstock characterization to dynamic simulation using a complete mADM1 model with 63 components, including AI-powered state generation and thermodynamic pH solving.

An intelligent MCP server for the automated design and sizing of aerobic biological wastewater treatment systems using membrane bioreactor (MBR) technology. It leverages ASM2d kinetics to perform mass balance calculations, flowsheet selection, and generate detailed engineering reports.

Enables AI-assisted aquaculture manuscript writing through six specialized agents for literature review, drafting, results, abstract, copyediting, and integrity checks, all accessible from MCP-compatible chat clients.

MyChart MCP Server

MCP server exposing REINVENT4 generative molecular-design operations as validated, LLM-callable tools for drug discovery, including sampling, transfer learning, reinforcement learning, and molecular analysis.

Provides read-only tools for planning, writing, and auditing lesion network mapping and connectome-based localization papers, including design classification, methods checklists, phrasebooks, limitations, and manuscript auditing.

Enables AI-assisted molecular biology experiment design with tools for qPCR primer design, cloning strategy optimization, TaqMan probe design, and multiplex compatibility analysis.

Enables LLM agents to search biomedical literature, retrieve article details, find related papers, manage caching, and download open-access full texts through MCP with structured, agent-friendly responses.

Enables AI assistants to rapidly gather and synthesize structural, chemical, conservation, and literature data about protein binding pockets for drug-target triage. Useful as a reconnaissance step before computational binder design.

Reads raw lab-instrument files (microscopy, mass spectrometry, chromatography, flow cytometry, NMR, electrophysiology, spectroscopy, plate readers, qPCR) without vendor software, returning metadata, images, spectra and traces as JSON. It also checks files for damage, runs common analyses, and exports to open formats such as OME-TIFF, OME-Zarr, mzML, Parquet and NWB.

Enables querying simulated healthcare professional engagement data from Supabase, including HCP profiles, interactions, consent status, prescribing trends, and segment analytics through natural language.

Enables design-correct, conversational analysis of NHANES public-use data by automating file discovery, merging, weight selection, pooling, survey variance estimation, and mortality-linked Cox models.

Enables MCP clients to discover and call typed tools for protein backbone design, sequence design, complex folding, and binder design via BioNeMo NIMs, with a deterministic simulator by default and optional live routing.

Enables interaction with Open Dental practice management software, allowing reading of patients, appointments, providers, procedures, and recalls, as well as writing communications back to patient charts via MCP clients.

Provides read/write access to any FHIR-compliant healthcare API with built-in validation, supporting resource management, search operations, and granular permissions through natural language.

Enables molecular design and simulation through 45 chemistry tools including pKa calculations, geometry optimization, conformer searches, docking, protein cofolding, and ADMET predictions powered by Rowan's computational chemistry platform.

MCP server for controlling UCSF ChimeraX molecular visualization software, enabling command execution, screenshots, structure analysis reports, and session management.